Lactobacillus hokkaidonensis LOOC260 |
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Putative Lactobacillus hokkaidonensis LOOC260 RM systems
Ref: Tanizawa,Y. et al. unpublished
REBASE ref # 18536
| Sequence length: | GenBank #: | |
| Chromosome: | 2,277,985 bp | AP014680 |
| plasmid pLOOC260-2: | 40,971 bp | AP014682 |
REBASE acronym: LhoC260
Org_num: 14145
All begin LOOC260_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 101000 | ADP-ribosylglycohydrolase | |||
| 101010 | R | Lma3618ORF3920P (78% identity) | LhoC260ORF101020P | |
| 101020 | M | M.Lma3618ORF3920P (86% identity) | M.LhoC260ORF101020P | |
| 101030 | pseudogene | |||
| 101030 | S | S.Efa7527ORF15245P (32% identity) | S1.LhoC260ORF101020P | |
| 101040 | integrase | |||
| 101040 | phage integrase | |||
| 101050 | S | S2.Lpl8ORF12400P (33% identity) | S2.LhoC260ORF101020P | |
| 101060 | S | S4.Lsa51ORF5828P (33% identity) | S3.LhoC260ORF101020P | |
| 101070 | 311 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 118450 | 107 aa hypothetical protein | |||
| 118460 | M | M.Lvi20605ORFEP (99% identity) | M.LhoC260ORF118460P | |
| 118470 | pseudogene | |||
| plasmid pLOOC260-2 | ||||
| 300250 | LtrC-like protein | |||
| 300260 | S | S.Lbr817ORF14190P (93% identity) | S.LhoC260ORF300270P | |
| 300270 | RM | LpaXI3ORFAP (97% identity) | LhoC260ORF300270P | |
| 300260 | pseudogene | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 101060 | 191 aa hypothetical protein | |||
| 101070 | R | Pda1536MrrP (56% identity) | LhoC260MrrP | |
| 101080 | pseudogene | |||