Helicobacter bilis ATCC 43879 |
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Putative Helicobacter bilis ATCC 43879 RM systems
Ref: Shen,Z. et al. Genome Announc 2 (5), e00857-14 (2014)
REBASE ref # 18258
Contig set: 2,523,721 bp
GenBank #: ACDN00000000 (NZ_ACDN00000000)
REBASE acronym: Hbi43879
Org_num: 13895
All begin HRAG_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1673 | cation diffusion facilitator family transporter | |||
| 1674 | S | S.Cup3940ORF297P (30% identity) | S.Hbi43879ORF1674P | |
| 2456 | 375 aa hypothetical protein | |||
| 844 | 199 aa hypothetical protein | |||
| 843 | M | M.Hwi170ORF7345P (72% identity) | M.Hbi43879ORF843P | |
| 842 | 160 aa hypothetical protein | |||
| 948 | pseudogene | |||
| 947 | R | Hwi2049ORF6930P (98% identity) | Hbi43879ORF943P | |
| 946 | 138 aa hypothetical protein | |||
| 945 | 280 aa hypothetical protein | |||
| 944 | S | S2.Hci94105ORF1700P (62% identity) | S.Hbi43879ORF943P | |
| 943 | M | M.Hci12219II (98% identity) | M.Hbi43879ORF943P | |
| 942 | 222 aa hypothetical protein | |||
| 234 | 256 aa hypothetical protein | |||
| 235 | M | M.HbiMUORF9835P (89% identity) | M.Hbi43879ORF235P | |
| ??? | R | HbiMUORF9835P (78% identity) | Hbi43879ORF235P | |
| 237 | S | 119 aa hypothetical protein | S.Hbi43879ORF235P | |
| 238 | 693 aa hypothetical protein | |||
| 1781 | 190 aa hypothetical protein | |||
| 1780 | S | S1.Hwi2049ORF6930P (63% identity) | S.Hbi43879ORF1780P | |
| 1779 | argininosuccinate synthase | |||
| 1495 | 161 aa hypothetical protein | |||
| 1496 | S | S.HciP01DORFHP (53% identity) | S.Hbi43879ORF1498P | |
| 1497 | 200 aa hypothetical protein | |||
| 1498 | M | M.Csp25113ORF1335P (97% identity) | M.Hbi43879ORF1498P | |
| 1499 | 754 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1244 | pseudogene | |||
| 1243 | M | M.HbiAAQJHORF8195P (97% identity) | CCGG | M.Hbi43879ORF1243P |
| 2312 | 44 aa hypothetical protein | |||
| 1036 | 53 aa hypothetical protein | |||
| 1035 | M | M.HbiAAQJHORF9005P (98% identity) | GANTC | M.Hbi43879ORF1035P |
| 1034 | 218 aa hypothetical protein | |||
| 2072 | 343 aa hypothetical protein | |||
| 2071 | M | M.Hwi170ORF305P (96% identity) | GATC | M.Hbi43879ORF2071P |
| 2070 | R | Hwi430ORFDP (94% identity) | GATC | Hbi43879ORF2071P |
| 2069 | 326 aa hypothetical protein | |||
| 1177 | 289 aa hypothetical protein | |||
| 1178 | R | HbiMUORF4735P (92% identity) | GAAGA | Hbi43879ORF1179P |
| 1179 | M | M2.Hci197ORF5255P (93% identity) | GAAGA | M1.Hbi43879ORF1179P |
| 1180 | M | M2.Cav24591ORF1709P (76% identity) | GAAGA | M2.Hbi43879ORF1179P |
| 1181 | 575 aa hypothetical protein | |||
| 1180 | pseudogene | |||
| 1181 | R | HciP01DORFMP (99% identity) | ACTGG | Hbi43879ORF1182P |
| 1182 | M | M1.HhiYS1ORFKP (61% identity) | ACTGG | M1.Hbi43879ORF1182P |
| 1183 | M | M.HciP01DORFMP (100% identity) | ACTGG | M2.Hbi43879ORF1182P |
| 1184 | alanyl-tRNA synthetase | |||
| 488 | TIGR00701 family protein | |||
| 489 | M | M2.HbiMUORF9595P (98% identity) | GCATC | M.Hbi43879ORF489P |
| 490 | 349 aa hypothetical protein | |||
| 489 | 194 aa hypothetical protein | |||
| 490 | M | M1.Cup11541IV (95% identity) | CCATC | M.Hbi43879ORF490P |
| 491 | 121 aa hypothetical protein | |||
| 663 | pyridoxine 5-phosphate synthase | |||
| ??? | M | M.HciP01DORFTP (86% identity) | GTNNAC | M.Hbi43879ORF664P |
| 665 | R | Csp12175ORF524P (69% identity) | GTNNAC | Hbi43879ORF664P |
| 2422 | 123 aa hypothetical protein | |||
| 515 | pseudogene | |||
| 516 | RM | Hci94105ORF1429P (91% identity) | Hbi43879ORF516P | |
| 518 | 110 aa hypothetical protein | |||
| 901 | M | M.Hci629ORFSP (91% identity) | GTAC | M.Hbi43879ORF901P |
| 900 | R | Cup12264ORF327P (93% identity) | GTAC | Hbi43879ORF901P |
| 899 | 142 aa hypothetical protein | |||
| 900 | 263 aa hypothetical protein | |||
| 899 | M | M.HbiAAQJHORF1270P (40% identity) | GTSAC | M.Hbi43879ORF899P |
| 898 | 346 aa hypothetical protein | |||
| 192 | efflux transporter, RND family, MFP subunit | |||
| 195 | M | M.Che9613ORF6910P (95% identity) | CCNNGG | M.Hbi43879ORF195P |
| 196 | R | Che9613ORF6910P (98% identity) | CCNNGG | Hbi43879ORF195P |
| 197 | 202 aa hypothetical protein | |||
| 202 | 161 aa hypothetical protein | |||
| 203 | S | S3.HbiMUORF9990P (26% identity) | S.Hbi43879ORF205P | |
| 204 | 223 aa hypothetical protein | |||
| 205 | RM | HbiMUORF9990P (99% identity) | Hbi43879ORF205P | |
| 206 | 85 aa hypothetical protein | |||
| 1254 | 129 aa hypothetical protein | |||
| 1253 | M | M.Hsp5293ORF6530P (46% identity) | M.Hbi43879ORF1253P | |
| 1252 | 104 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1875 | 190 aa hypothetical protein | |||
| 1876 | R | Hci12221ORF120P (95% identity) | Hbi43879ORF1879P | |
| 1877 | 333 aa hypothetical protein | |||
| 1878 | 507 aa hypothetical protein | |||
| 1879 | M | M.Hca12410ORF699P (70% identity) | M.Hbi43879ORF1879P | |
| 1880 | flagellar basal-body rod protein FlgG | |||