Pseudomonas putida ND6 |
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Putative Pseudomonas putida ND6 RM systems
Ref: Li,W. et al. Gene 336 (2), 231-240 (2004)
REBASE ref # 14552
Complete sequence: 6,085,449 bp
GenBank #: CP003588
REBASE acronym: PpuND6
Org_num: 8952
All begin YSA_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3549 | 656 aa hypothetical protein | |||
| 3552 | S | S.PpuSJTE1ORFAP (100% identity) | S.PpuND6ORF3553P | |
| 3553 | M | M.PpuSJTE1ORFAP (100% identity) | M.PpuND6ORF3553P | |
| 3556 | 277 aa hypothetical protein | |||
| 3558 | R | PpuSJTE1ORFAP (100% identity) | PpuND6ORF3553P | |
| 3561 | 46 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3449 | phage integrase | |||
| 3453 | RM | PspJYQORF4135P (100% identity) | PpuND6ORF3453P | |
| 3455 | 40 aa hypothetical protein | |||
| 7639 | phage protein | |||
| 7641 | M | M.PspBO34ORF6595P (96% identity) | M.PpuND6ORF7641P | |
| 7643 | 293 aa hypothetical protein | |||
| 9175 | mannitol operon repressor | |||
| 9177 | M | M.PtaWRS8ORF23070P (100% identity) | M.PpuND6ORF9177P | |
| 9181 | 182 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3547 | 49 aa hypothetical protein | |||
| 3549 | R | PpuSJTE1GmrSDP (100% identity) | PpuND6GmrSDP | |
| 3552 | restriction modification system DNA specificity | |||
| 3553 | N-6 DNA methylase | |||
| 3556 | R | PspHTZ2ORFBP (98% identity) | PpuND6ORF3556P | |
| 3558 | EcoEI R domain-containing protein | |||
| 3575 | 57 aa hypothetical protein | |||
| 3578 | R | PpuSJTE1McrCP (100% identity) | PpuND6McrCP | |
| 3582 | R | PpuSJTE1McrBP (98% identity) | PpuND6McrBP | |
| 3585 | 58 aa hypothetical protein | |||