Salmonella enterica subsp. enterica serovar Newport CVM N1543 |
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Putative Salmonella enterica subsp. enterica serovar Newport CVM N1543 RM systems
Ref: Timme,R. et al. unpublished
REBASE ref # 17577
| Sequence length: | GenBank #: | |
| Chromosome: | 4,860,892 bp | CP010284 |
| plasmid pCVMN1543: | 85,837 bp | CP009570 |
REBASE acronym: SenN1543
Org_num: 15111
All begin SEEN543_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23605 | integrase arm-type DNA-binding domain-containing | |||
| 23610 | S | S.Sens29927ORF20405P (100% identity) | TTACNNNNNTGC | S.SenN1543ORF23615P |
| 23615 | M | M.Sens29927ORF20405P (100% identity) | TTACNNNNNTGC | M.SenN1543ORF23615P |
| 23620 | R | Sens29927ORF20405P (100% identity) | TTACNNNNNTGC | SenN1543ORF23615P |
| 23625 | WYL domain-containing protein | |||
| 11415 | DUF5655 domain-containing protein | |||
| 23740 | R | Sen22622ORF19510P (100% identity) | SenN1543ORF23750P | |
| 23745 | S | S.Sens29927ORF20165P (100% identity) | CCGANNNNNGTC | S1.SenN1543ORF23750P |
| 23750 | M | M.Sen22622ORF19510P (100% identity) | M.SenN1543ORF23750P | |
| 23755 | restriction endonuclease | |||
| 23760 | 44 aa hypothetical protein | |||
| 23765 | N-6 DNA methylase | |||
| 23770 | S | S.Sens29927ORF20150P (100% identity) | S2.SenN1543ORF23750P | |
| 23775 | 3-5 exonuclease | |||
| 11425 | endoribonuclease SymE | |||
| 11430 | S | S.SenS224ORF19910P (100% identity) | GACNNNNNNNRTCC | S.SenN1543ORF11435P |
| 11435 | M | M.SenS3ORF11567P (100% identity) | GACNNNNNNNRTCC | M.SenN1543ORF11435P |
| 11440 | R | Spy5740IP (100% identity) | GACNNNNNNNRTCC | SenN1543ORF11435P |
| 11445 | membrane protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23725 | restriction endonuclease | |||
| 11305 | R | SenXORF20240P (100% identity) | SenN1543ORF11305P | |
| 11310 | YebC/PmpR family DNA-binding transcriptional | |||
| 22005 | drug/metabolite exporter YedA | |||
| 22010 | V | V.StyTDcmP (100% identity) | V.SenN1543DcmP | |
| 22015 | M | M.Sens29927DcmP (100% identity) | CCWGG | M.SenN1543DcmP |
| 22020 | phosphohydrolase | |||
| 24745 | RusA family crossover junction | |||
| 24750 | M | M.SenN1660ORF9225P (100% identity) | GATC | M.SenN1543ORF24750P |
| 24755 | PerC family transcriptional regulator | |||
| 17220 | 82 aa hypothetical protein | |||
| ??? | M | M.SenNORF1143P (100% identity) | GATC | M.SenN1543ORF17225P |
| 17235 | 112 aa hypothetical protein | |||
| 7040 | replication endonuclease | |||
| 7035 | M | M.Sens8785ORF3520P (100% identity) | GATC | M.SenN1543ORF7035P |
| 25760 | DUF3850 domain-containing protein | |||
| 6160 | DNA-binding transcriptional regulator Fis | |||
| 6155 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenN1543ORF6155P |
| 6150 | DUF2556 family protein | |||
| 5680 | ribulose-phosphate 3-epimerase | |||
| 5675 | M | M.StyTDamP (100% identity) | GATC | M.SenN1543DamP |
| 5670 | cell division protein DamX | |||
| plasmid pCVMN1543 | ||||
| 26185 | 232 aa hypothetical protein | |||
| 26190 | M | M.Sen58588ORF22745P (100% identity) | M.SenN1543ORF26190P | |
| 26195 | recombination-associated protein RdgC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13645 | MFS transporter | |||
| 13650 | M | M.Sens29927ORF17960P (100% identity) | CAGAG | M.SenN1543ORF13650P |
| 13655 | R | Sens29927ORF17960P (100% identity) | CAGAG | SenN1543ORF13650P |
| 23935 | small effector SsaA | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23720 | TA system toxin CbtA family protein | |||
| 23725 | R | SenS38AMrrP (100% identity) | SenN1543MrrP | |
| 11305 | HNH endonuclease | |||
| 23750 | class I SAM-dependent DNA methyltransferase | |||
| 23755 | R | SenTTBMrrP (100% identity) | SenN1543Mrr2P | |
| 23760 | 44 aa hypothetical protein | |||