Haemophilus parasuis SH03 |
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Putative Haemophilus parasuis SH03 RM systems
Ref: Li,P. et al. unpublished
REBASE ref # 18081
Complete sequence: 2,265,927 bp
GenBank #: CP009158
REBASE acronym: HpaSH03
Org_num: 13577
All begin JL26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2515 | acyltransferase | |||
| 2520 | R | Hpa906ORF3080P (99% identity) | HpaSH03ORF2530P | |
| 2525 | S | S.Hpa15995ORF790P (66% identity) | S.HpaSH03ORF2530P | |
| 2530 | M | M.Hpa906ORF3080P (100% identity) | M.HpaSH03ORF2530P | |
| 2540 | RNA polymerase sigma factor RpoE | |||
| 4015 | 87 aa hypothetical protein | |||
| ??? | S | restriction endonuclease subunit S | S1.HpaSH03ORF4015P | |
| 4020 | IS256 family transposase | |||
| 4025 | transposase | |||
| ??? | S | S1.Hpa906ORF4500P (95% identity) | S2.HpaSH03ORF4015P | |
| 4035 | HNH endonuclease | |||
| 4040 | M | M.HpaSHORF1954P (100% identity) | M.HpaSH03ORF4015P | |
| 4045 | metal-dependent hydrolase | |||
| 4050 | DUF3387 domain-containing protein | |||
| 4055 | 143 aa hypothetical protein | |||
| 4060 | cytochrome C nitrite reductase | |||
| 4065 | transposase | |||
| ??? | S | S2.Hpa906ORF4500P (100% identity) | S3.HpaSH03ORF4015P | |
| 4075 | 369 aa hypothetical protein | |||
| 4045 | metal-dependent hydrolase | |||
| 4050 | R | HpaSH03ORF4015P (90% identity) | HpaSH03ORF4050P | |
| 4055 | 143 aa hypothetical protein | |||
| 4275 | aspartate aminotransferase | |||
| 4280 | R | Gpa1807ORF6225P (99% identity) | HpaSH03ORF4290P | |
| 4285 | S | S.HpaST41ORF2410P (99% identity) | S.HpaSH03ORF4290P | |
| 4290 | M | M.GpaHPS7ORF3225P (99% identity) | M.HpaSH03ORF4290P | |
| 4295 | MFS transporter | |||
| 7910 | DNA polymerase | |||
| 7920 | M | S.Gpa29755ORF10425P (90% identity) | M.HpaSH03ORF7920P | |
| 7925 | 134 aa hypothetical protein | |||
| 9185 | tRNA uridine 5-carboxymethylaminomethyl | |||
| 9190 | S | S.Gpa412ORF95P (26% identity) | S1.HpaSH03ORF9215P | |
| ??? | S | S.Hpa906ORF10680P (62% identity) | S2.HpaSH03ORF9215P | |
| 9200 | R | GpaXP11ORF8450P (99% identity) | HpaSH03ORF9215P | |
| 9205 | 392 aa hypothetical protein | |||
| 9210 | 163 aa hypothetical protein | |||
| 9215 | M | M.Gpad76ORF11115P (99% identity) | M.HpaSH03ORF9215P | |
| 9220 | 16S rRNA methyltransferase | |||
| 10035 | 137 aa hypothetical protein | |||
| 10045 | M | M.HpaST41ORF7300P (99% identity) | M.HpaSH03ORF10045P | |
| 10050 | anticodon nuclease | |||
| 10055 | S | S.Gpa170504ORF10760P (65% identity) | S.HpaSH03ORF10045P | |
| 10060 | 255 aa hypothetical protein | |||
| 10065 | 141 aa hypothetical protein | |||
| 10070 | R | Hpa15995ORF1730P (99% identity) | HpaSH03ORF10045P | |
| 10080 | 71 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1650 | aspartate-semialdehyde dehydrogenase | |||
| ??? | M | M.Gpa412ORF4725P (98% identity) | M.HpaSH03ORF1655P | |
| 1670 | pseudogene | |||
| 2160 | peptide chain release factor 1 | |||
| 2165 | M | M.HpaNNORF3850P (100% identity) | GCGC | M.HpaSH03ORF2165P |
| 2170 | R | HpaSHORF791P (100% identity) | GCGC | HpaSH03ORF2165P |
| 2175 | SAM-dependent methyltransferase | |||
| ??? | restriction endonuclease subunit S | |||
| 4035 | R | Gpa412ORF7180P (100% identity) | HpaSH03ORF4035P | |
| 4040 | modification methylase | |||
| 4760 | 199 aa hypothetical protein | |||
| 4765 | M | M.HpaNagORF227P (99% identity) | CCGG | M.HpaSH03ORF4765P |
| 4770 | condesin subunit E | |||
| 6210 | 3-dehydroquinate synthase | |||
| 6215 | M | M.HpaST41ORF8035P (100% identity) | GATC | M.HpaSH03ORF6215P |
| 6220 | transporter | |||
| 7005 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate | |||
| 7010 | M | M.HpaST41ORF8905P (100% identity) | CGCG | M.HpaSH03ORF7010P |
| 7015 | R | HpaST41ORF8905P (100% identity) | CGCG | HpaSH03ORF7010P |
| 7020 | lactate dehydrogenase | |||
| 7925 | 134 aa hypothetical protein | |||
| 7930 | M | HpaNagORF1885P (100% identity) | M1.HpaSH03ORF7930P | |
| 7935 | M | HpaNagORF1886P (100% identity) | M2.HpaSH03ORF7930P | |
| 7940 | RM | HpaNagORF1887P (100% identity) | HpaSH03ORF7930P | |
| 7945 | twitching motility protein PilT | |||
| 8545 | 197 aa hypothetical protein | |||
| 8550 | R | HpaSHORF1983P (98% identity) | AAGCTT | HpaSH03ORF8550P |
| ??? | M | M.Hpa906ORF10045P (100% identity) | AAGCTT | M.HpaSH03ORF8550P |
| 8560 | valine--tRNA ligase | |||
| 10285 | 113 aa hypothetical protein | |||
| 10290 | RM | GpaH80ORF9365P (99% identity) | HpaSH03ORF10290P | |
| 10295 | S | S.Hpa906ORF11765P (99% identity) | S.HpaSH03ORF10290P | |
| 10300 | toxin Fic | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10735 | ketol-acid reductoisomerase | |||
| ??? | M | M.GpaHF57ORF830P (95% identity) | CTCC | M.HpaSH03ORF10740P |
| 10750 | R | Gpa4ORF1105P (99% identity) | CTCC | HpaSH03ORF10740P |
| 10755 | addiction module protein | |||