Peptoclostridium difficile |
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Putative Peptoclostridium difficile RM systems
Ref: Monot,Marc. unpublished
REBASE ref # 17896
| Sequence length: | GenBank #: | |
| Chromosome: | 107,333 bp | LK932534 |
| Chromosome: | 432,619 bp | LK932525 |
| Chromosome: | 40,753 bp | LK932521 |
| Chromosome: | 158,168 bp | LK932516 |
| Chromosome: | 81,390 bp | LK932523 |
REBASE acronym: Pdi6601
Org_num: 13379
All begin BN1096_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 700236 | 687 aa conserved hypothetical protein | |||
| 700237 | R | Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | Pdi6601ORF700242P |
| 700238 | 142 aa conserved hypothetical protein | |||
| 700239 | 126 aa hypothetical protein | |||
| 700240 | 102 aa conserved hypothetical protein | |||
| 700241 | S | S.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | S.Pdi6601ORF700242P |
| 700242 | M | M.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | M.Pdi6601ORF700242P |
| 700243 | tagatose-bisphosphate aldolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 790078 | 112 aa conserved hypothetical protein | |||
| 790079 | R | Pdi6602ORF790080P (100% identity) | GATC | Pdi6601ORF790080P |
| 790080 | M | M.Pdi6602ORF790080P (100% identity) | GATC | M.Pdi6601ORF790080P |
| 790081 | 63 aa hypothetical protein | |||
| Chromosome | ||||
| 700334 | Sortase B (modular protein) | |||
| 700335 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.Pdi6601ORF700335P |
| 700336 | 872 aa Hypothetical protein | |||
| Chromosome | ||||
| 620004 | 274 aa hypothetical protein | |||
| 620005 | M | M.Pdi6602ORF250005P (100% identity) | CTSAG | M.Pdi6601ORF620005P |
| 620006 | Two-component response regulator (fragment) | |||
| Chromosome | ||||
| 690040 | acyl transferase/phospholipase | |||
| 690041 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Pdi6601ORF690041P |
| 690042 | Transcriptional regulator, Rrf2 family | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 700235 | membrane protein | |||
| 700236 | R | Pdi6602GmrSDP (100% identity) | Pdi6601GmrSDP | |
| 700237 | Type i restriction enzyme r subunit | |||
| Chromosome | ||||
| 670008 | Transcriptional regulator, sigma-54-dependent | |||
| 670009 | R | Pdi6602McrCP (100% identity) | Pdi6601McrCP | |
| 670010 | R | Pdi6602McrBP (100% identity) | Pdi6601McrBP | |
| 670011 | cell division GTPase | |||