Dermacoccus nishinomiyaensis M25 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Dermacoccus nishinomiyaensis M25 RM systems
Ref: Hong,K.W. and Chan,K.G. unpublished
REBASE ref # 14914
| Sequence length: | GenBank #: | |
| Chromosome: | 3,029,021 bp | CP008889 |
| plasmid unnamed: | 84,621 bp | CP008890 |
REBASE acronym: DniM25
Org_num: 13374
All begin HX89_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6300 | pseudogene | |||
| 6305 | M | M.Dni2534ORFAP (95% identity) | GAGNNNNNNATGCC | M.DniM25II |
| ??? | S | S.JspDB40ORFAP (32% identity) | GAGNNNNNNATGCC | S.DniM25II |
| 6315 | R | Dni2528ORFAP (98% identity) | GAGNNNNNNATGCC | DniM25IIP |
| 6320 | 428 aa hypothetical protein | |||
| 13815 | short-chain dehydrogenase | |||
| 13820 | R | Dni8ORF13140P (98% identity) | CACNNNNNNCTCC | DniM25IP |
| 13825 | S | S.Asp190I (33% identity) | CACNNNNNNCTCC | S.DniM25I |
| 13830 | 234 aa hypothetical protein | |||
| 13835 | restriction endonuclease | |||
| 13840 | 86 aa hypothetical protein | |||
| 13845 | M | M.Dni8ORF13140P (98% identity) | CACNNNNNNCTCC | M.DniM25I |
| 13855 | 118 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1060 | RM | RspR04ORFHP (58% identity) | DniM25ORF1060P | |
| 6950 | pseudogene | |||
| 6955 | M | M.MteKU313ORF8085P (88% identity) | GCCGGC | M.DniM25ORF6955P |
| 6960 | R | R1.Sru945ORF1041P (28% identity) | GCCGGC | R1.DniM25ORF6955P |
| 6965 | transposase | |||
| 6970 | transposase | |||
| 6975 | pseudogene | |||
| 6980 | R | CspKWTBORFBP (78% identity) | GCCGGC | R2.DniM25ORF6955P |
| 6985 | 683 aa hypothetical protein | |||
| plasmid unnamed | ||||
| 14475 | transposase | |||
| 14485 | RM | Osp3305ORF7410P (56% identity) | DniM25ORF14485P | |
| 14490 | 654 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1005 | 202 aa hypothetical protein | |||
| 1010 | R | Dsp28757ORF11875P (60% identity) | DniM25ORF1010P | |
| 1015 | 384 aa hypothetical protein | |||
| 5815 | 3-phosphoglycerate dehydrogenase | |||
| ??? | R | Dni2528McrBP (99% identity) | DniM25McrBP | |
| ??? | R | Dni1119McrCP (99% identity) | DniM25McrCP | |
| 5830 | membrane protein | |||
| 13830 | 234 aa hypothetical protein | |||
| 13835 | R | KvaG6MrrP (50% identity) | DniM25MrrP | |
| 13840 | 86 aa hypothetical protein | |||