Salmonella enterica subsp. enterica serovar Typhimurium L-3553 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium L-3553 RM systems
Ref: Sekizuka,T. et al. unpublished
REBASE ref # 17973
| Sequence length: | GenBank #: | |
| Chromosome: | 5,051,841 bp | AP014565 |
| plasmid pST3553: | 132,611 bp | AP014566 |
REBASE acronym: Sen3553
Org_num: 7048
All begin STL3553_c, STL3553_p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 48770 | endoribonuclease syme | |||
| 48780 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen3553ORF48790P |
| 48790 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.Sen3553ORF48790P |
| 48800 | R | Sen143792ORF24215P (100% identity) | GAGNNNNNNRTAYG | Sen3553ORF48790P |
| 48810 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3410 | 131 aa hypothetical protein | |||
| ??? | M | M.SenC1810ORF16105P (100% identity) | M.Sen3553ORF3420P | |
| 3430 | phage protein | |||
| 9620 | 128 aa conserved hypothetical protein | |||
| 9630 | M | M.YrupYR1ORFCP (100% identity) | CCNGG | M.Sen3553ORF9630P |
| 9640 | 100 aa hypothetical protein | |||
| 21820 | 306 aa hypothetical protein | |||
| 21830 | V | V.StyUK1DcmP (100% identity) | V.Sen3553DcmP | |
| 21840 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen3553DcmP |
| 21850 | 231 aa conserved hypothetical protein | |||
| 22310 | phage protein | |||
| 22320 | M | M.StyUK1V (100% identity) | GATC | M.Sen3553ORF22320P |
| 22330 | replication protein | |||
| 36830 | Fis DNA-binding protein | |||
| 36840 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen3553ORF36840P |
| 36850 | 54 aa hypothetical protein | |||
| 37780 | ribulose-phosphate 3-epimerase | |||
| 37790 | M | M.StyTDamP (100% identity) | GATC | M.Sen3553DamP |
| 37800 | DamX protein | |||
| 48410 | abc-type sugar/spermidine/putrescine | |||
| 48420 | RM | StyUK1IV (100% identity) | GATCAG | Sen3553ORF48420P |
| 48430 | dna repair atpase | |||
| plasmid pST3553 | ||||
| 990 | 62 aa hypothetical protein | |||
| 1000 | M | M.StyUK1ORFAP (100% identity) | M.Sen3553ORF1000P | |
| 1010 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4240 | metabolite transport protein | |||
| 4250 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen3553ORF4250P |
| 4260 | R | StyUK1IP (99% identity) | CAGAG | Sen3553ORF4250P |
| 4270 | 44 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 48800 | type I restriction enzyme ecoki subunit R | |||
| 48810 | R | StyUK1MrrP (100% identity) | Sen3553MrrP | |
| 48820 | 95 aa hypothetical protein | |||