Pseudomonas pseudoalcaligenes |
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Putative Pseudomonas pseudoalcaligenes RM systems
Ref: Wibberg,Daniel. unpublished
REBASE ref # 17754
Complete sequence: 4,696,984 bp
GenBank #: LK391695
REBASE acronym: Pps5344
Org_num: 12218
All begin PPSAL_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3122 | Chromodomain-helicase-DNA-binding protein 7 | |||
| 3123 | R | Pae85ORFDP (98% identity) | GCCANNNNNNTTA | Pps5344IIIP |
| 3124 | McrBC 5-methylcytosine restriction system | |||
| 3125 | GTPase subunit of restriction endonucleas | |||
| ??? | S | S.Pst875ORF7305P (100% identity) | GCCANNNNNNTTA | S.Pps5344III |
| 3127 | M | M.Psp3P5ORF4610P (99% identity) | GCCANNNNNNTTA | M.Pps5344III |
| 3128 | 235 aa hypothetical protein | |||
| 3507 | SMC domain-containing protein | |||
| 3508 | S | S.PspNIH3I (98% identity) | GAGNNNNNNCTGG | S.Pps5344II |
| 3509 | 34 aa hypothetical protein | |||
| 3510 | M | M.SmaT5020ORFCP (100% identity) | GAGNNNNNNCTGG | M.Pps5344II |
| 3511 | transcriptional regulator | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 906 | dihydrodipicolinate reductase | |||
| 907 | R | PspDV1ORF4795P (100% identity) | Pps5344ORF914P | |
| 908 | M | M.Pol4132ORF17730P (99% identity) | M.Pps5344ORF914P | |
| 909 | carbamoyl-phosphate synthase, small subunit | |||
| 1026 | 319 aa hypothetical protein | |||
| 1027 | R | SspI (82% identity) | AATATT | Pps5344IP |
| 1028 | M | M.SspI (76% identity) | AATATT | M.Pps5344I |
| 1029 | 117 aa hypothetical protein | |||
| 1718 | protein y4hO | |||
| 1719 | M | M.PkhODT83ORF12205P (98% identity) | GGCC | M.Pps5344ORF1740P |
| 1720 | phosphoribosyl-ATP diphosphatase | |||
| 1953 | 185 aa hypothetical protein | |||
| 1954 | M | M.PpuRRORF11P (98% identity) | M.Pps5344ORF1977P | |
| 1955 | DNA topoisomerase III | |||
| 4014 | prophage CPS-53 integrase | |||
| 4015 | RM | PspDV1ORF21245P (99% identity) | Pps5344ORF4076P | |
| 4016 | Transcriptional repressor rghR | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1754 | amidohydrolase | |||
| 1755 | R | Pol10860ORF2182P (99% identity) | Pps5344ORF1777P | |
| 1756 | methyltransferase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3123 | type I restriction-modification enzyme, R | |||
| 3124 | R | Psp3P5McrCP (100% identity) | Pps5344McrCP | |
| 3125 | R | Psp3P5McrBP (100% identity) | Pps5344McrBP | |
| 3126 | restriction modification system DNA specificity | |||