Salmonella enterica subsp. enterica serovar Cerro CFSAN001588 |
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Putative Salmonella enterica subsp. enterica serovar Cerro CFSAN001588 RM systems
Ref: Timme,R.E. et al. unpublished
REBASE ref # 17513
| Sequence length: | GenBank #: | |
| Chromosome: | 4,651,400 bp | CP012833 |
| Chromosome: | 4,699,438 bp | AYVF00000000 (NZ_AYVF00000000) |
| plasmid pCFSAN001588_002: | 62,884 bp | CP012835 |
REBASE acronym: Sen1588
Org_num: 12906
All begin CFSAN001588_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1620 | cell division protein DamX | |||
| 1625 | M | DNA adenine methylase | GATC | M.Sen1588DamP |
| 1630 | ribulose phosphate epimerase | |||
| 2110 | 54 aa hypothetical protein | |||
| 2115 | M | M.Sensp14178ORF2230P (100% identity) | ATGCAT | M.Sen1588ORF20785P |
| 2120 | Fis family transcriptional regulator | |||
| 5240 | integrase | |||
| 5245 | R | SenCer87ORF1735P (100% identity) | Sen1588ORF9725P | |
| 5250 | M | M.SenCer87ORF1735P (100% identity) | GCCGGC | M.Sen1588ORF9725P |
| 5255 | phage tail protein | |||
| 13355 | conjugal transfer protein TraR | |||
| ??? | M | M.Sen543ORF3912P (100% identity) | GATC | M.Sen1588ORF10725P |
| 13365 | 80 aa hypothetical protein | |||
| 13490 | multidrug DMT transporter | |||
| 13495 | V | endonuclease | V.Sen1588DcmP | |
| 13500 | M | M.SenCer87Dcm (100% identity) | CCWGG | M.Sen1588DcmP |
| 13505 | hydrolase | |||
| Chromosome | ||||
| 19750 | 67 aa hypothetical protein | |||
| 19755 | M | M.Sen4346ORF22715P (100% identity) | M.Sen1588ORF19755P | |
| 19760 | 73 aa hypothetical protein | |||
| 20780 | Fis family transcriptional regulator | |||
| 20785 | M | M.Sensp14178ORF2230P (100% identity) | ATGCAT | M.Sen1588ORF20785P |
| 20790 | 54 aa hypothetical protein | |||
| 415 | ribulose-phosphate 3-epimerase | |||
| 420 | M | DNA adenine methylase | GATC | M.Sen1588DamP |
| 425 | cell division protein DamX | |||
| 10580 | hydrolase | |||
| 10585 | M | M.SenCer87Dcm (100% identity) | CCWGG | M.Sen1588DcmP |
| 10590 | V | very short patch repair endonuclease | V.Sen1588DcmP | |
| 10595 | multidrug transporter | |||
| 9720 | HNH endonuclease | |||
| ??? | M | M.SenCer87ORF1735P (100% identity) | GCCGGC | M.Sen1588ORF9725P |
| 9730 | pseudogene | |||
| 10720 | 80 aa hypothetical protein | |||
| 10725 | M | M.Sen543ORF3912P (100% identity) | GATC | M.Sen1588ORF10725P |
| 10730 | conjugal transfer protein TraR | |||
| plasmid pCFSAN001588_002 | ||||
| 22860 | 67 aa hypothetical protein | |||
| 22865 | M | M.Sen4346ORF22715P (100% identity) | M.Sen1588ORF19755P | |
| 22870 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16990 | 33 aa hypothetical protein | |||
| ??? | R | SenCer87IP (100% identity) | CAGAG | Sen1588ORF6220P |
| 17000 | M | M.SenS316II (100% identity) | CAGAG | M.Sen1588ORF6220P |
| 17005 | sugar transporter | |||
| Chromosome | ||||
| 6210 | cytochrome D ubiquinol oxidase subunit I | |||
| ??? | R | SenCer87IP (100% identity) | CAGAG | Sen1588ORF6220P |
| 6220 | M | M.SenS316II (100% identity) | CAGAG | M.Sen1588ORF6220P |
| 6225 | sugar transporter | |||