Helicobacter pylori BM012B |
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Putative Helicobacter pylori BM012B RM systems
Ref: Linz,B. et al. Nat Commun (2014) In press
REBASE ref # 17578
Complete sequence: 1,659,060 bp
GenBank #: CP007605
REBASE acronym: Hpy12B
Org_num: 12844
All begin EG66_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5775 | membrane protein | |||
| 5785 | S | S.Hpy12SORF1098P (100% identity) | S.Hpy12BORF5785P | |
| 5790 | cadmium transporter | |||
| 6080 | resolvase | |||
| 6085 | M | M.Hpy12SORF1159P (83% identity) | M.Hpy12BORF6085P | |
| 6090 | membrane protein | |||
| 6345 | 631 aa hypothetical protein | |||
| 6350 | R | Hpy479C2ORFB1P (24% identity) | R1.Hpy12BORF6370P | |
| 6355 | transposase | |||
| 6360 | resolvase | |||
| 6365 | R | Hpy12SORF1216BP (100% identity) | R2.Hpy12BORF6370P | |
| 6370 | M | M.Hpy12SORF1216P (100% identity) | M.Hpy12BORF6370P | |
| 6375 | S | S.HpyCA17ORF2160P (98% identity) | S.Hpy12BORF6370P | |
| 6390 | polyphosphate kinase | |||
| 8135 | FAD-dependent thymidylate synthase | |||
| ??? | S | S.HpyGE12ORF7650P (91% identity) | S.Hpy12BORF8155P | |
| 8150 | pseudogene | |||
| ??? | M | M.Hpy12SORF1558P (100% identity) | M.Hpy12BORF8155P | |
| 8160 | 115 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 275 | agmatine deiminase | |||
| 280 | M | M1.Hpy12SORF50P (100% identity) | CCTC | M1.Hpy12BORF280P |
| 285 | M | M2.Hpy12SORF50P (100% identity) | CCTC | M2.Hpy12BORF280P |
| 290 | R | Hpy12SORF50P (87% identity) | CCTC | Hpy12BORF280P |
| 295 | DNA methyltransferase | |||
| 305 | 266 aa hypothetical protein | |||
| ??? | R | Hpy12SORF59P (100% identity) | GANTC | Hpy12BORF320P |
| 320 | M | M.Hpy12SORF59P (99% identity) | GANTC | M.Hpy12BORF320P |
| 325 | DNA methyltransferase | |||
| 320 | DNA methyltransferase | |||
| ??? | RM | hypothetical protein | Hpy12BORF325P | |
| 335 | nicotinate-nucleotide pyrophosphorylase | |||
| 555 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 560 | M | M.Hpy12SORF104P (100% identity) | GAATTC | M.Hpy12BORF560P |
| 565 | addiction module protein | |||
| 570 | agmatine deiminase | |||
| 575 | M | 172 aa hypothetical protein | GDGCHC | M.Hpy12BORF575P |
| ??? | DNA-cytosine methyltransferase | |||
| 575 | 172 aa hypothetical protein | |||
| ??? | M | M.Hpy12SORF107P (100% identity) | M.Hpy12BORF580P | |
| 585 | carbamoyl phosphate synthase small subunit | |||
| 720 | serine acetyltransferase | |||
| 725 | R | Hpy12SORF139P (100% identity) | CATG | Hpy12BORF730P |
| 730 | M | M.Hpy12SORF139P (100% identity) | CATG | M.Hpy12BORF730P |
| 735 | hydrolase | |||
| 1365 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | Hpy12SORF255P (100% identity) | GAATTC | Hpy12BORFBP |
| 1385 | peptidase S41 | |||
| 1960 | prephenate dehydrogenase | |||
| ??? | M | M.Hpy12SORF369P (100% identity) | CCTC | M.Hpy12BORFAP |
| 1975 | pseudogene | |||
| 1970 | pseudogene | |||
| 1975 | M | pseudogene | GTSAC | M.Hpy12BORF1975P |
| 1980 | transposase | |||
| 2310 | malonyl CoA-ACP transacylase | |||
| 2320 | R | HpySWT05XP (95% identity) | GATC | Hpy12BORF2325P |
| 2325 | M | M.Hpy12SORF437P (100% identity) | GATC | M.Hpy12BORF2325P |
| 2330 | alpha-1,2-fucosyltransferase | |||
| 2755 | elongation factor P | |||
| 2760 | M | M1.HpyLI20ORF870P (96% identity) | M.Hpy12BORF2760P | |
| 2770 | 5-methylcytosine-specific restriction protein B | |||
| ??? | ATPase AAA | |||
| 2775 | ATPase AAA | |||
| 2780 | R | Hpy12SORF520P (100% identity) | Hpy12BORF2760P | |
| 2785 | N-acetylneuraminate synthase | |||
| 3200 | exodeoxyribonuclease VII large subunit | |||
| 3205 | R | Hpy12SORF604P (100% identity) | CCGG | Hpy12BORF3210P |
| 3210 | M | M.Hpy12SORF604P (100% identity) | CCGG | M.Hpy12BORF3210P |
| 3215 | chaperone protein ClpB | |||
| 3450 | 293 aa hypothetical protein | |||
| 3455 | R | Hpy12SORF653P (100% identity) | CTNAG | Hpy12BORF3460P |
| 3460 | M | M.Hpy12SORF653P (100% identity) | CTNAG | M.Hpy12BORF3460P |
| 3465 | 120 aa hypothetical protein | |||
| 4055 | ATP-dependent DNA helicase | |||
| 4060 | M | M.Hpy12SORF766P (100% identity) | GTNNAC | M.Hpy12BORF4060P |
| 4065 | R | Hpy12SORF766P (99% identity) | GTNNAC | Hpy12BORF4060P |
| 4070 | flagellar hook protein FlgE | |||
| 4285 | DNA gyrase subunit B | |||
| 4290 | M | M.Hpy12SORF813P (100% identity) | GTAC | M.Hpy12BORF4290P |
| ??? | R | HpyIceORFPP (82% identity) | GTAC | Hpy12BORF4290P |
| 4305 | membrane protein | |||
| 5145 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpySW30ORF3210P (87% identity) | Hpy12BORF5150P | |
| 5170 | membrane protein | |||
| 6245 | catalase | |||
| 6250 | M | M.HpyT005ORF2335P (96% identity) | ACGT | M.Hpy12BORF6250P |
| 6255 | restriction endonuclease | |||
| 6250 | pseudogene | |||
| 6255 | R | Hpy12SORF1195P (100% identity) | ACNGT | Hpy12BORF6260P |
| 6260 | M | M.Hpy12SORF1195P (100% identity) | ACNGT | M.Hpy12BORF6260P |
| 6265 | GTP-binding protein | |||
| 6270 | glycosyltransferase 9 family protein | |||
| 6275 | M | M.Hpy12SORF1198P (98% identity) | ATTAAT | M.Hpy12BORF6275P |
| 6280 | membrane protein | |||
| 7330 | methyltransferase | |||
| 7335 | M | M.Hpy12SORF1404P (100% identity) | TCNNGA | M.Hpy12BORF7335P |
| ??? | R | Hpy12SORF1404P (100% identity) | TCNNGA | Hpy12BORF7335P |
| 7345 | Laminin subunit alpha-2 precursor | |||
| 7535 | 144 aa hypothetical protein | |||
| 7540 | M | M.Hpy12SORF1442P (100% identity) | GCGC | M.Hpy12BORF7540P |
| 7545 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 7825 | DNA polymerase I | |||
| 7830 | S | S.Hpy12SORF1498P (100% identity) | S.Hpy12BORF7835P | |
| 7835 | RM | Hpy12SORF1498P (100% identity) | Hpy12BORF7835P | |
| 7840 | amidophosphoribosyltransferase | |||
| 7965 | permease | |||
| ??? | R | Hpy12SORF1525P (100% identity) | CCATC | Hpy12BORF7970P |
| 7975 | membrane protein | |||
| 8045 | transcription elongation factor NusA | |||
| 8065 | RM | Hpy12SORF1540P (100% identity) | Hpy12BORF8065P | |
| 8070 | DEAD/DEAH box helicase | |||
| 8245 | 67 aa hypothetical protein | |||
| 8250 | M | M.Hpy12SORF1577P (100% identity) | TGCA | M.Hpy12BORF8250P |
| 8255 | R | Hpy12SORF1577P (100% identity) | TGCA | Hpy12BORF8250P |
| 8260 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 385 | chemotaxis protein CheY | |||
| 390 | M | M.Hpy12SORF74P (100% identity) | M.Hpy12BORF390P | |
| 395 | R | Hpy12SORF74P (99% identity) | Hpy12BORF390P | |
| 400 | rod shape-determining protein MreC | |||
| 455 | endonuclease | |||
| 460 | M | M.Hpy12SORF87P (99% identity) | M.Hpy12BORF460P | |
| 465 | R | Hpy12SORF87P (95% identity) | Hpy12BORF460P | |
| 470 | biotin synthase | |||
| 4760 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 4765 | R | Hpy12SORF903P (99% identity) | GCAG | Hpy12BORF4770P |
| 4770 | M | M.Hpy12SORF903P (96% identity) | GCAG | M.Hpy12BORF4770P |
| 4780 | disulfide bond formation protein DsbB | |||
| 8065 | restriction endonuclease | |||
| 8070 | R | Hpy12SORF1542P (100% identity) | Hpy12BORF8080P | |
| ??? | M | M.Hpy12AORF1538P (100% identity) | M.Hpy12BORF8080P | |
| 8085 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2760 | cytosine methyltransferase | |||
| ??? | R | Hpy12SMcrBP (100% identity) | Hpy12BMcrBP | |
| 2780 | llaJI restriction endonuclease | |||
| 4340 | glutamine synthetase | |||
| 4345 | R | Hpy12SGmrSDP (94% identity) | Hpy12BGmrSDP | |
| 4350 | 50S ribosomal protein L9 | |||