Helicobacter pylori BM013A |
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Putative Helicobacter pylori BM013A RM systems
Ref: Linz,B. et al. Nat Commun (2014) In press
REBASE ref # 17578
Complete sequence: 1,604,233 bp
GenBank #: CP007604
REBASE acronym: Hpy13A
Org_num: 12843
All begin EG63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2270 | polyphosphate kinase | |||
| 2285 | S | S.Hpy13ORF2290P (100% identity) | S.Hpy13AORF2290P | |
| 2290 | M | M.Hpy13ORF2290P (100% identity) | M.Hpy13AORF2290P | |
| 2295 | R | Hpy13ORF2290P (100% identity) | Hpy13AORF2290P | |
| 2300 | 631 aa hypothetical protein | |||
| 4075 | hydroxyethylthiazole kinase | |||
| 4080 | R | Hpy13ORF4095P (100% identity) | Hpy13AORF4090P | |
| 4085 | S | S.Hpy13ORF4095P (100% identity) | S.Hpy13AORF4090P | |
| ??? | M | M.Hpy13ORF4095P (100% identity) | M.Hpy13AORF4090P | |
| 4100 | membrane protein | |||
| 6995 | 81 aa hypothetical protein | |||
| 7005 | S | S.Hpy13ORF7010P (100% identity) | S.Hpy13AORF7005P | |
| 7010 | formyltetrahydrofolate deformylase | |||
| 7780 | FAD-dependent thymidylate synthase | |||
| ??? | S | S.HpyGE10ORF7410P (93% identity) | S.Hpy13AORF7800P | |
| 7800 | M | M.Hpy13ORF7805P (100% identity) | M.Hpy13AORF7800P | |
| 7805 | R | Hpy13ORF7805P (100% identity) | Hpy13AORF7800P | |
| 7810 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 270 | agmatine deiminase | |||
| 275 | M | M1.Hpy13ORF275P (100% identity) | CCTC | M1.Hpy13AORF275P |
| 280 | M | M2.Hpy13ORF275P (100% identity) | CCTC | M2.Hpy13AORF275P |
| 285 | proline:sodium symporter PutP | |||
| 475 | malonyl CoA-ACP transacylase | |||
| 485 | R | Hpy13ORF495P (100% identity) | GATC | Hpy13AORF490P |
| 490 | M | M.Hpy13ORF495P (100% identity) | GATC | M.Hpy13AORF490P |
| 495 | alpha-1,2-fucosyltransferase | |||
| 1360 | exodeoxyribonuclease VII large subunit | |||
| 1365 | R | HpyIN5IVP (100% identity) | CCGG | Hpy13AORF1370P |
| 1370 | M | M.HpyKH30ORFPP (100% identity) | CCGG | M.Hpy13AORF1370P |
| 1375 | chaperone protein ClpB | |||
| 2370 | membrane protein | |||
| 2375 | M | M.Hpy13ORF2375P (100% identity) | ATTAAT | M.Hpy13AORF2375P |
| 2380 | glycosyltransferase 9 family protein | |||
| 2385 | GTP-binding protein | |||
| 2390 | M | M.Hpy13ORF2390P (100% identity) | ACGT | M.Hpy13AORF2390P |
| 2395 | catalase | |||
| 2490 | DNA gyrase subunit B | |||
| 2495 | M | M.Hpy13ORF2495P (100% identity) | GTAC | M.Hpy13AORF2495P |
| 2500 | R | Hpy13ORF2495P (100% identity) | GTAC | Hpy13AORF2495P |
| 2505 | membrane protein | |||
| 3175 | glycerol-3-phosphate dehydrogenase | |||
| 3180 | RM | Hpy13ORF3180P (100% identity) | Hpy13AORF3180P | |
| 3185 | 450 aa hypothetical protein | |||
| 4400 | flagellar hook protein FlgE | |||
| 4405 | R | Hpy13ORF4415P (100% identity) | GTNNAC | Hpy13AORF4410P |
| 4410 | M | M.Hpy13ORF4415P (100% identity) | GTNNAC | M.Hpy13AORF4410P |
| 4415 | ATP-dependent DNA helicase | |||
| 5200 | acetyl-CoA carboxylase | |||
| 5205 | M | M.Hpy13ORF5210P (100% identity) | TCNNGA | M.Hpy13AORF5205P |
| 5210 | R | HpyME23XIP (100% identity) | TCNNGA | Hpy13AORF5205P |
| 5215 | Laminin subunit alpha-2 precursor | |||
| 5400 | 144 aa hypothetical protein | |||
| 5405 | M | M.Hpy13ORF5410P (100% identity) | GCGC | M.Hpy13AORF5405P |
| 5410 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5695 | membrane protein | |||
| 5705 | M | M.Hpy13ORF5710P (100% identity) | TCNGA | M.Hpy13AORF5705P |
| 5710 | R | Hpy13ORF5710P (100% identity) | TCNGA | Hpy13AORF5705P |
| 5715 | purine nucleoside phosphorylase | |||
| 5895 | hydrolase | |||
| ??? | M | M.Hpy13ORF5905P (100% identity) | CATG | M.Hpy13AORF5900P |
| 5905 | R | pseudogene | CATG | Hpy13AORF5900P |
| 5915 | serine acetyltransferase | |||
| 6670 | glycosyltransferase 9 family protein | |||
| 6675 | RM | DNA methyltransferase | Hpy13AORF6675P | |
| 6685 | DNA methyltransferase | |||
| 6675 | DNA methyltransferase | |||
| 6685 | RM | Hpy13ORF6690P (100% identity) | Hpy13AORF6685P | |
| 6690 | nicotinate-nucleotide pyrophosphorylase | |||
| 6740 | chemotaxis protein CheY | |||
| 6745 | R | Hpy13ORF6755P (100% identity) | GAAGA | Hpy13AORF6750P |
| 6750 | M | M1.Hpy13ORF6755P (100% identity) | GAAGA | M1.Hpy13AORF6750P |
| 6755 | M | M2.Hpy13ORF6755P (100% identity) | GAAGA | M2.Hpy13AORF6750P |
| 6760 | site-specific DNA-methyltransferase | |||
| 6910 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 6915 | R | HpyISR10ORF6770P (100% identity) | CGCG | Hpy13AORF6920P |
| 6920 | M | M.HpyISR10ORF6770P (100% identity) | CGCG | M.Hpy13AORF6920P |
| 6925 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7225 | DNA polymerase I | |||
| 7230 | S | S.Hpy13ORF7240P (100% identity) | S.Hpy13AORF7235P | |
| 7235 | RM | Hpy13ORF7240P (100% identity) | Hpy13AORF7235P | |
| 7240 | amidophosphoribosyltransferase | |||
| 7365 | permease | |||
| 7370 | M | M1.Hpy13ORF7375P (100% identity) | CCATC | M1.Hpy13AORF7370P |
| 7375 | M | M2.Hpy13ORF7375P (100% identity) | GATGG | M2.Hpy13AORF7370P |
| 7380 | R | Hpy13ORF7375P (100% identity) | CCATC | Hpy13AORF7370P |
| 7385 | membrane protein | |||
| 7455 | transcription elongation factor NusA | |||
| 7470 | RM | Hpy13ORF7475P (100% identity) | Hpy13AORF7470P | |
| 7475 | DEAD/DEAH box helicase | |||
| 7885 | 67 aa hypothetical protein | |||
| 7890 | M | M.Hpy13ORF7895P (100% identity) | TGCA | M.Hpy13AORF7890P |
| 7895 | R | Hpy13ORF7895P (100% identity) | TGCA | Hpy13AORF7890P |
| 7900 | cytochrome C | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6755 | restriction endonuclease subunit M | |||
| 6760 | M | M1.Hpy13ORF6765P (100% identity) | M1.Hpy13AORF6760P | |
| 6765 | M | DNA methyltransferase | M2.Hpy13AORF6760P | |
| 6770 | R | Hpy13ORF6765P (100% identity) | Hpy13AORF6760P | |
| 6775 | rod shape-determining protein MreC | |||
| 6825 | endonuclease | |||
| 6830 | M | M.Hpy13ORF6835P (100% identity) | TCAG | M.Hpy13AORF6830P |
| 6835 | R | Hpy13ORF6835P (98% identity) | TCAG | Hpy13AORF6830P |
| 6845 | biotin synthase | |||
| 7470 | restriction endonuclease | |||
| 7475 | R | Hpy13ORF7485P (100% identity) | Hpy13AORF7480P | |
| ??? | M | M.Hpy13ORF7485P (100% identity) | M.Hpy13AORF7480P | |
| 7490 | integrase | |||
| 7715 | relaxase | |||
| 7725 | M | M.Hpy13ORF7730P (99% identity) | M.Hpy13AORF7725P | |
| 7730 | ATP-dependent DNA helicase RecG | |||