Luteimonas huabeiensis HB2 |
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Putative Luteimonas huabeiensis HB2 RM systems
Ref: Liu,Y. et al. Genome Announc 2 (2), e00152-14 (2014)
REBASE ref # 17372
GenBank #: JAAN00000000
REBASE acronym: LhuHB2
Org_num: 12815
All begin G9H77_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 12250 | M48 family metallopeptidase | |||
| 12255 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoCRE38IIIP |
| 12260 | macro domain-containing protein | |||
| 12265 | DUF4433 domain-containing protein | |||
| 12270 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.EcoCRE38III |
| 12275 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoCRE38III |
| 12280 | transcription factor | |||
| 20170 | transposase | |||
| 20175 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoCRE38I |
| 20180 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoCRE38I |
| 20185 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoCRE38IP |
| 20190 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M1.Sth15264ORF7330P (84% identity) | M.LhuHB2ORFEP | |
| ??? | M | M1.SfoJG42ORFCP (74% identity) | M.LhuHB2ORFFP | |
| 22920 | 102 aa hypothetical protein | |||
| 22925 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoCRE38ORF22925P |
| 22930 | 73 aa hypothetical protein | |||
| ??? | M | M.Tta154175ORFHP (72% identity) | M.LhuHB2ORFDP | |
| ??? | V | V.PaeB3509aORFCP (100% identity) | V.LhuHB2ORFBP | |
| ??? | M | M.PaePRD10ORF3815P (100% identity) | GTCGAC | M.LhuHB2ORFBP |
| ??? | R | R1.PaeB3509aORFCP (100% identity) | GTCGAC | LhuHB2ORFBP |
| ??? | M | M.SspA1ORFGP (99% identity) | CTCGAG | M.LhuHB2ORFGP |
| ??? | R | SspA1ORFGP (98% identity) | CTCGAG | LhuHB2ORFGP |
| ??? | M | M.LhuHB2ORFFP (85% identity) | M.LhuHB2ORFCP | |
| 575 | DNA-binding transcriptional regulator Fis | |||
| 580 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoCRE38ORF580P |
| 585 | DUF2556 family protein | |||
| ??? | M | M.Pae14723ORFCP (73% identity) | M1.LhuHB2ORFJP | |
| ??? | M | 122 aa hypothetical protein | M2.LhuHB2ORFJP | |
| ??? | M | M2.SfoJG42ORFCP (89% identity) | M.LhuHB2ORFAP | |
| ??? | S | S.PspZM23ORF6590P (100% identity) | S.LhuHB2ORFHP | |
| ??? | M | M2.PspZM23ORF6590P (98% identity) | M1.LhuHB2ORFHP | |
| ??? | M | M1.PspZM23ORF6590P (97% identity) | M2.LhuHB2ORFHP | |
| ??? | M | M.XpeTC21ORFFP (69% identity) | RGATCY | M.LhuHB2ORFLP |
| ??? | R | XpeTC21ORFFP (82% identity) | LhuHB2ORFLP | |
| 1200 | ribulose-phosphate 3-epimerase | |||
| 1205 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoCRE38DamP |
| 1210 | cell division protein DamX | |||
| 4240 | 68 aa hypothetical protein | |||
| 4245 | M | M.EcosE2ORF21575P (100% identity) | GGCC | M.EcoCRE38ORF4245P |
| 4250 | 341 aa hypothetical protein | |||
| 16930 | drug/metabolite exporter YedA | |||
| 16935 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoCRE38DcmP |
| 16940 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoCRE38DcmP |
| 16945 | phosphohydrolase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.EceSA3ORFAP (18% identity) | M.LhuHB2ORFKP | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12950 | recombinase family protein | |||
| 12955 | R | EcoteDMcrBP (100% identity) | EcoCRE38McrBP | |
| 12960 | R | EcosEC27McrCP (100% identity) | EcoCRE38McrCP | |
| 12965 | isocitrate dehydrogenase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11065 | TraR/DksA family transcriptional regulator | |||
| 11070 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoCRE38ORF11070P |
| 11075 | replication endonuclease | |||