Ref: Bourniquel,A.A. et al. Plasmid 47 (2), 153-157 (2002)

REBASE ref # 7414

Sequence length:GenBank #:
Chromosome: (contig set) CCDV00000000
chromosome I: 2,050,316 bp LS991409
plasmid pN42: 8,140 bp AJ421627 (NC_004850)

REBASE acronym: LdeN42

Org_num: 3465

 

All begin ACADC178_, LBCNRZ327_

Type I
ORF Gene Most similar Specificity Name
 
Chromosome
 
3670 uncharacterized protein
3665 R Lde34717ORF3960P (100% identity) Lde327ORF3665P
3660 uncharacterized protein
 
chromosome I
 
964 Saccharopine dehydrogenase related protein
965 R LdeNDORF970P (99% identity) LdeLKORF966P
966 M M.Lde3035ORF3115P (99% identity) M.LdeLKORF966P
967 S S2.Lde581ORF1597P (64% identity) S1.LdeLKORF966P
968 Integrase
??? S S3.Lde20080ORF4610P (56% identity) S2.LdeLKORF966P
970 LysR family transcriptional regulatory protein
 
1093 pseudogene
1094 R Lde871ORF440P (99% identity) LdeLKORF1100P
1095 39 aa hypothetical protein
1096 S S3.LsaGJ24ORF1681P (22% identity) S1.LdeLKORF1100P
1097 S S3.Lde871ORF440P (46% identity) S2.LdeLKORF1100P
1098 pseudogene
1099 S S.Lde581ORF1647P (93% identity) S3.LdeLKORF1100P
1100 M M.Lde581ORF1647P (100% identity) M.LdeLKORF1100P
1101 pseudogene
 
plasmid pN42
 
??? S S3.Lde15610ORF135P (59% identity) S.LdeN42ORFAP
??? replication protein
Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
2530 VirE domain protein
10825 RM Lde34717ORF8160P (100% identity) Lde327ORF10825P
10830 T0SGJ6 (Uncharacterized protein)
 
3360 uncharacterized protein
3355 M M.Lde34717ORF3670P (100% identity) M.Lde327ORF3355P
11610 uncharacterized protein
 
chromosome I
 
1045 Phosphinothricin N-acetyltransferase
1046 M M.LdeP3MRAORF5135P (98% identity) M.LdeLKORF1046P
1047 Type II restriction endonuclease
 
1046 methylase
1047 RM Lde20080ORF5095P (94% identity) LdeLKORF1047P
1048 narrowly conserved hypothetical protein
Type III
ORF Gene Most similar Specificity Name
 
Chromosome
 
3070 uncharacterized protein
3065 R LdeLJJIIP (97% identity) Lde327ORFAP
11640 uncharacterized protein
??? M M1.Lde34717ORF3375P (98% identity) M.Lde327ORFAP
3050 207 aa Hypothetical protein
Type IV
ORF Gene Most similar Specificity Name
 
Chromosome
 
10335 uncharacterized protein
10330 R Lde3034ORF185P (100% identity) Lde327ORF10330P
10325 236 aa Conserved hypothetical membrane protein
 
4700 101 aa Hypothetical membrane protein
4705 R Lde34717ORF495P (100% identity) Lde327ORF4705P
4710 UDP-glucose 4-epimerase
 
chromosome I
 
31 Substrate-specific component PdxU of predicted
32 R Lde581ORF1729P (100% identity) LdeLKORF32P
33 Predicted integral membrane protein
 
437 RNA methyltransferase, TrmA family
438 R Lde3034MrrP (100% identity) LdeLKMrrP
439 Carbonic anhydrase
 
1604 FIG00746725: hypothetical protein
1605 R Lde3202ORF14870P (98% identity) LdeLKORF1605P
1606 UDP-glucose 4-epimerase