Lactobacillus delbrueckii subsp. lactis |
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Putative Lactobacillus delbrueckii subsp. lactis RM systems
Ref: Bourniquel,A.A. et al. Plasmid 47 (2), 153-157 (2002)
REBASE ref # 7414
| Sequence length: | GenBank #: | |
| Chromosome: | (contig set) | CCDV00000000 |
| chromosome I: | 2,050,316 bp | LS991409 |
| plasmid pN42: | 8,140 bp | AJ421627 (NC_004850) |
REBASE acronym: LdeN42
Org_num: 3465
All begin ACADC178_, LBCNRZ327_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3670 | uncharacterized protein | |||
| 3665 | R | Lde34717ORF3960P (100% identity) | Lde327ORF3665P | |
| 3660 | uncharacterized protein | |||
| chromosome I | ||||
| 964 | Saccharopine dehydrogenase related protein | |||
| 965 | R | LdeNDORF970P (99% identity) | LdeLKORF966P | |
| 966 | M | M.Lde3035ORF3115P (99% identity) | M.LdeLKORF966P | |
| 967 | S | S2.Lde581ORF1597P (64% identity) | S1.LdeLKORF966P | |
| 968 | Integrase | |||
| ??? | S | S3.Lde20080ORF4610P (56% identity) | S2.LdeLKORF966P | |
| 970 | LysR family transcriptional regulatory protein | |||
| 1093 | pseudogene | |||
| 1094 | R | Lde871ORF440P (99% identity) | LdeLKORF1100P | |
| 1095 | 39 aa hypothetical protein | |||
| 1096 | S | S3.LsaGJ24ORF1681P (22% identity) | S1.LdeLKORF1100P | |
| 1097 | S | S3.Lde871ORF440P (46% identity) | S2.LdeLKORF1100P | |
| 1098 | pseudogene | |||
| 1099 | S | S.Lde581ORF1647P (93% identity) | S3.LdeLKORF1100P | |
| 1100 | M | M.Lde581ORF1647P (100% identity) | M.LdeLKORF1100P | |
| 1101 | pseudogene | |||
| plasmid pN42 | ||||
| ??? | S | S3.Lde15610ORF135P (59% identity) | S.LdeN42ORFAP | |
| ??? | replication protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2530 | VirE domain protein | |||
| 10825 | RM | Lde34717ORF8160P (100% identity) | Lde327ORF10825P | |
| 10830 | T0SGJ6 (Uncharacterized protein) | |||
| 3360 | uncharacterized protein | |||
| 3355 | M | M.Lde34717ORF3670P (100% identity) | M.Lde327ORF3355P | |
| 11610 | uncharacterized protein | |||
| chromosome I | ||||
| 1045 | Phosphinothricin N-acetyltransferase | |||
| 1046 | M | M.LdeP3MRAORF5135P (98% identity) | M.LdeLKORF1046P | |
| 1047 | Type II restriction endonuclease | |||
| 1046 | methylase | |||
| 1047 | RM | Lde20080ORF5095P (94% identity) | LdeLKORF1047P | |
| 1048 | narrowly conserved hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3070 | uncharacterized protein | |||
| 3065 | R | LdeLJJIIP (97% identity) | Lde327ORFAP | |
| 11640 | uncharacterized protein | |||
| ??? | M | M1.Lde34717ORF3375P (98% identity) | M.Lde327ORFAP | |
| 3050 | 207 aa Hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10335 | uncharacterized protein | |||
| 10330 | R | Lde3034ORF185P (100% identity) | Lde327ORF10330P | |
| 10325 | 236 aa Conserved hypothetical membrane protein | |||
| 4700 | 101 aa Hypothetical membrane protein | |||
| 4705 | R | Lde34717ORF495P (100% identity) | Lde327ORF4705P | |
| 4710 | UDP-glucose 4-epimerase | |||
| chromosome I | ||||
| 31 | Substrate-specific component PdxU of predicted | |||
| 32 | R | Lde581ORF1729P (100% identity) | LdeLKORF32P | |
| 33 | Predicted integral membrane protein | |||
| 437 | RNA methyltransferase, TrmA family | |||
| 438 | R | Lde3034MrrP (100% identity) | LdeLKMrrP | |
| 439 | Carbonic anhydrase | |||
| 1604 | FIG00746725: hypothetical protein | |||
| 1605 | R | Lde3202ORF14870P (98% identity) | LdeLKORF1605P | |
| 1606 | UDP-glucose 4-epimerase | |||