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Putative Helicobacter pylori oki828 RM systems
Ref: Satou,K. et al. unpublished
REBASE ref # 17432
Complete sequence: 1,600,345 bp
GenBank #: CP006826
REBASE acronym: Hpy828
Org_num: 12455
All begin HPOKI828_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2280 | polyphosphate kinase | |||
2290 | S | S.Hpy154ORF2310P (99% identity) | S.Hpy828ORF2295P | |
2295 | M | M.Hpy673ORF2300P (97% identity) | M.Hpy828ORF2295P | |
2300 | R | Hpy154ORF2310P (97% identity) | Hpy828ORF2295P | |
2305 | 631 aa hypothetical protein | |||
3995 | pseudogene | |||
4000 | S | S.Hpy673ORF4000P (98% identity) | S.Hpy828ORF4000P | |
4005 | cadmium transporter | |||
4315 | 38 aa hypothetical protein | |||
4320 | R | HpyOki128ORF4085P (98% identity) | Hpy828ORF4330P | |
4325 | S | S.HpyNCI32ORFSP (93% identity) | S.Hpy828ORF4330P | |
4330 | M | M.HpyJA105ORF3495P (98% identity) | M.Hpy828ORF4330P | |
4335 | membrane protein | |||
7150 | 31 aa hypothetical protein | |||
7155 | S | S.Hpy673ORF7135P (100% identity) | S.Hpy828ORF7155P | |
7160 | formyltetrahydrofolate deformylase | |||
7685 | FAD-dependent thymidylate synthase | |||
7690 | S | S.Hpy673ORF7675P (100% identity) | S.Hpy828ORF7695P | |
7695 | M | M.Hpy154ORF7685P (99% identity) | M.Hpy828ORF7695P | |
7700 | R | Hpy154ORF7685P (98% identity) | Hpy828ORF7695P | |
7705 | metal-dependent hydrolase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
280 | 177 aa hypothetical protein | |||
285 | R | Hpy673ORF290P (100% identity) | TGCA | Hpy828ORF290P |
290 | M | 38 aa hypothetical protein | TGCA | M.Hpy828ORF290P |
295 | transposase IS605 | |||
300 | transposase IS200 | |||
305 | M | 134 aa hypothetical protein | CCTC | M.Hpy828ORF305P |
??? | R | Hpy673ORF305P (100% identity) | CCTC | Hpy828ORF305P |
315 | pseudogene | |||
525 | malonyl CoA-ACP transacylase | |||
535 | R | HpyOK95ORFLP (100% identity) | GATC | Hpy828ORF540P |
540 | M | M.HpyOK95ORFLP (100% identity) | GATC | M.Hpy828ORF540P |
545 | pseudogene | |||
1405 | exodeoxyribonuclease VII large subunit | |||
1410 | M | M.Hpy673ORF1415P (100% identity) | TCGA | M.Hpy828ORF1410P |
1415 | 203 aa hypothetical protein | |||
1415 | 203 aa hypothetical protein | |||
1420 | R | Hpyfe29ORF5810P (99% identity) | CCGG | Hpy828ORF1425P |
1425 | M | M.HpySG32III (100% identity) | CCGG | M.Hpy828ORF1425P |
1430 | molecular chaperone ClpB | |||
1660 | 293 aa hypothetical protein | |||
1665 | R | HpyF233ORFMP (99% identity) | CTNAG | Hpy828ORF1670P |
1670 | M | M.Hpyfe2ORF5685P (99% identity) | CTNAG | M.Hpy828ORF1670P |
1675 | 125 aa hypothetical protein | |||
2370 | membrane protein | |||
2375 | M | M.Hpy673ORF2380P (99% identity) | ATTAAT | M.Hpy828ORF2375P |
2380 | glycosyltransferase 9 family protein | |||
2385 | GTP-binding protein | |||
2390 | M | M.HpyJA106II (100% identity) | ACNGT | M.Hpy828ORF2390P |
2395 | R | Hpy673ORF2395P (100% identity) | ACNGT | Hpy828ORF2390P |
2400 | type II restriction endonuclease | |||
2395 | type II restriction endonuclease | |||
2400 | M | type II restriction endonuclease | ACGT | M.Hpy828ORF2400P |
2405 | 36 aa hypothetical protein | |||
2595 | integrase | |||
??? | M | DNA methyltransferase | ACGT | M.Hpy828ORF2600P |
??? | R | Hpyfe110ORF5235P (57% identity) | ACGT | Hpy828ORF2600P |
2610 | catalase | |||
2710 | DNA gyrase subunit B | |||
2715 | M | M.HpyOK314ORFVP (98% identity) | GTAC | M.Hpy828ORF2715P |
2720 | R | HpyJ017XP (98% identity) | GTAC | Hpy828ORF2715P |
2725 | membrane protein | |||
3395 | glycerol-3-phosphate dehydrogenase subunit C | |||
3400 | RM | HpyOki128ORF3185P (97% identity) | Hpy828ORF3400P | |
3405 | membrane protein | |||
3490 | polysaccharide biosynthesis protein | |||
3495 | M | M.HpyOki128ORF3270P (100% identity) | CCNNGG | M.Hpy828ORF3495P |
3500 | R | Hpy154ORF3500P (100% identity) | CCNNGG | Hpy828ORF3495P |
3505 | polysaccharide biosynthesis protein | |||
4610 | flagellar hook protein FlgE | |||
4615 | R | HpyOki128ORF4365P (99% identity) | GTNNAC | Hpy828ORF4620P |
4620 | M | M.HpyOki128ORF4365P (99% identity) | GTNNAC | M.Hpy828ORF4620P |
4625 | ATP-dependent DNA helicase | |||
5385 | biotin carboxylase | |||
5390 | M | M.Hpy673ORF5380P (100% identity) | TCNNGA | M.Hpy828ORF5390P |
5395 | R | Hpy673ORF5380P (100% identity) | TCNNGA | Hpy828ORF5390P |
5400 | Laminin subunit alpha-2 precursor | |||
5575 | 144 aa hypothetical protein | |||
5580 | M | M.HpyJA106XIV (100% identity) | GCGC | M.Hpy828ORF5580P |
5585 | flgM protein | |||
6085 | hydrolase | |||
6090 | M | M.HpyOki128ORF5810P (99% identity) | CATG | M.Hpy828ORF6090P |
6095 | 59 aa hypothetical protein | |||
6845 | peptidase S41 | |||
6850 | R | HpyJA106ORF290P (100% identity) | GANTC | Hpy828ORF6850P |
6855 | DNA methyltransferase | |||
6850 | type II restriction endonuclease | |||
6855 | M | M.Hpy154ORF6845P (100% identity) | GANTC | M.Hpy828ORF6855P |
6860 | RM | HpyJA114ORF255P (92% identity) | Hpy828ORF6855P | |
6865 | nicotinate-nucleotide pyrophosphorylase | |||
7060 | lipopolysaccharide 1,2-glucosyltransferase | |||
7065 | M | M.Hpy673ORF7045P (100% identity) | GAATTC | M.Hpy828ORF7065P |
7070 | R | HpyOK95ORFVP (100% identity) | GAATTC | Hpy828ORF7065P |
7075 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
7365 | DNA polymerase I | |||
7370 | S | S2.HpyOK313ORFFP (93% identity) | S.Hpy828ORF7375P | |
7375 | RM | Hpy38ORF1425P (96% identity) | Hpy828ORF7375P | |
7380 | amidophosphoribosyltransferase | |||
7505 | permease | |||
7510 | M | M1.HpyJA106IV (100% identity) | GATGG | M1.Hpy828ORF7510P |
7515 | M | M2.Hpy673ORF7490P (99% identity) | CCATC | M2.Hpy828ORF7510P |
7520 | R | Hpy673ORF7490P (99% identity) | CCATC | Hpy828ORF7510P |
7525 | membrane protein | |||
7615 | 178 aa hypothetical protein | |||
??? | RM | Hpy154ORF7610P (98% identity) | Hpy828ORF7620P | |
7625 | DEAD/DEAH box helicase | |||
7780 | 68 aa hypothetical protein | |||
7785 | M | M.Hpyfe92ORF7690P (76% identity) | TGCA | M.Hpy828ORF7785P |
7790 | DNA methyltransferase | |||
7785 | type II methylase | |||
7790 | M | M2.HpyOki128ORF6200P (100% identity) | CCTC | M2.Hpy828ORF7790P |
7795 | M | M1.HpyJA105V (100% identity) | CCTC | M1.Hpy828ORF7790P |
7800 | agmatine deiminase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
4140 | 145 aa hypothetical protein | |||
4145 | R | Hpy673ORF4150P (99% identity) | Hpy828ORF4150P | |
4150 | M | M.HpyJA105ORF3655P (98% identity) | M.Hpy828ORF4150P | |
4155 | osmoprotection protein (proWX) | |||
6980 | endonuclease | |||
6985 | M | M.Hpy154ORF6975P (99% identity) | M.Hpy828ORF6985P | |
6990 | R | HpyK110ORF6605P (94% identity) | Hpy828ORF6985P | |
6995 | type III restriction endonuclease subunit R | |||
??? | 1180 aa hypothetical protein | |||
7625 | R | HpyOK95ORFEP (100% identity) | Hpy828ORF7630P | |
7630 | M | M.HpyGU83AORFEP (98% identity) | M.Hpy828ORF7630P | |
7635 | ATP-dependent DNA helicase RecG | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2760 | glutamine synthetase | |||
2765 | R | Hpy673GmrSDP (90% identity) | Hpy828GmrSDP | |
2770 | 50S ribosomal protein L9 |