Helicobacter pylori oki422 |
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Putative Helicobacter pylori oki422 RM systems
Ref: Satou,K. et al. unpublished
REBASE ref # 17432
Complete sequence: 1,634,852 bp
GenBank #: CP006824
REBASE acronym: Hpy422
Org_num: 12453
All begin HPOKI422_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2480 | polyphosphate kinase | |||
| 2490 | S | S.HpyOki112ORF2495P (100% identity) | S.Hpy422ORF2495P | |
| 2495 | M | M.HpyOK80ORFQP (100% identity) | M.Hpy422ORF2495P | |
| 2500 | R | HpyJA104ORF2310P (99% identity) | Hpy422ORF2495P | |
| 2505 | 631 aa hypothetical protein | |||
| 2755 | membrane protein | |||
| 2760 | M | M.HpyOK85ORFUP (100% identity) | M.Hpy422ORF2760P | |
| 2765 | S | S.HpyOK85ORFUP (68% identity) | S.Hpy422ORF2760P | |
| 2770 | R | HpyOK85ORFUP (99% identity) | Hpy422ORF2760P | |
| 2775 | hydroxyethylthiazole kinase | |||
| 3065 | cadmium transporter | |||
| 3070 | S | S.Hpyfe71ORF4730P (97% identity) | S.Hpy422ORF3070P | |
| 3080 | membrane protein | |||
| 7800 | cag pathogenicity island protein | |||
| 7805 | S | S.HpyOK80ORFFP (100% identity) | S.Hpy422ORF7810P | |
| 7810 | M | M.HpyOK80ORFFP (99% identity) | M.Hpy422ORF7810P | |
| 7815 | R | HpyOki112ORF7795P (100% identity) | Hpy422ORF7810P | |
| 7820 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 280 | DNA methyltransferase | |||
| ??? | M | M.HpyOki112ORF280P (100% identity) | GAATTC | M.Hpy422ORFAP |
| 290 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 280 | DNA methyltransferase | |||
| ??? | M | M.HpyOki112ORF280P (100% identity) | GAATTC | M.Hpy422ORF285P |
| 290 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 490 | nicotinate-nucleotide pyrophosphorylase | |||
| 495 | RM | HpyOK85ORFLP (91% identity) | Hpy422ORF495P | |
| 500 | 42 aa hypothetical protein | |||
| 505 | agmatine deiminase | |||
| 510 | M | M1.HpyOK85ORFKP (100% identity) | CCTC | M1.Hpy422ORF510P |
| 515 | M | M2.HpyOki112ORF500P (100% identity) | CCTC | M2.Hpy422ORF510P |
| 520 | R | HpyOK85ORFKP (100% identity) | CCTC | Hpy422ORF510P |
| 525 | type II restriction endonuclease | |||
| 520 | type II DNA modification enzyme | |||
| 525 | M | M.HpyOki112ORF515P (100% identity) | GTSAC | M.Hpy422ORF525P |
| 530 | R | HpyOK85ORFOP (100% identity) | GTSAC | Hpy422ORF525P |
| 535 | type II restriction endonuclease | |||
| 750 | HrgA protein | |||
| 755 | M | M.HpyOK85ORFPP (99% identity) | M.Hpy422ORF755P | |
| 760 | pseudogene | |||
| 1600 | exodeoxyribonuclease VII large subunit | |||
| 1605 | R | HpyOki112ORF1605P (99% identity) | CCGG | Hpy422ORF1610P |
| 1610 | M | M.HpyOki112ORF1605P (100% identity) | CCGG | M.Hpy422ORF1610P |
| 1615 | molecular chaperone ClpB | |||
| 1845 | 293 aa hypothetical protein | |||
| 1850 | R | HpyOki112ORF1850P (100% identity) | CTNAG | Hpy422ORF1855P |
| 1855 | M | M.HpyOki112ORF1850P (100% identity) | CTNAG | M.Hpy422ORF1855P |
| 1860 | 122 aa hypothetical protein | |||
| 2040 | elongation factor 4 | |||
| 2045 | M | M.HpyUSU101ORF2045P (100% identity) | GCNGC | M.Hpy422ORF2045P |
| 2050 | 156 aa hypothetical protein | |||
| 2565 | membrane protein | |||
| 2570 | M | M.HpyOK85ORFTP (99% identity) | ATTAAT | M.Hpy422ORF2570P |
| 2575 | glycosyltransferase 9 family protein | |||
| 2580 | GTP-binding protein | |||
| 2585 | M | M.HpyJA108ORF2300P (100% identity) | ACGT | M.Hpy422ORF2585P |
| 2590 | R | HpyOK85ORFJP (100% identity) | ACGT | Hpy422ORF2585P |
| 2595 | 71 aa hypothetical protein | |||
| 3675 | pseudogene | |||
| ??? | RM | HpyOK80ORFTP (99% identity) | Hpy422ORF3680P | |
| 3685 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 4765 | flagellar hook protein FlgE | |||
| 4770 | R | HpyOK85ORFVP (100% identity) | GTNNAC | Hpy422ORF4775P |
| 4775 | M | M.HpyK045XI (99% identity) | GTNNAC | M.Hpy422ORF4775P |
| 4780 | ATP-dependent DNA helicase | |||
| 5710 | Biotin carboxylase of acetyl-CoA carboxylase | |||
| 5715 | M | M.HpyOki112ORF5725P (88% identity) | TCNNGA | M.Hpy422ORF5715P |
| 5720 | R | HpyOki112ORF5725P (100% identity) | Hpy422ORF5715P | |
| 5725 | Laminin subunit alpha-2 precursor | |||
| 5930 | 144 aa hypothetical protein | |||
| 5935 | M | M.HpyOki112ORF5935P (100% identity) | GCGC | M.Hpy422ORF5935P |
| 5940 | flgM protein | |||
| 6420 | hydrolase | |||
| 6425 | M | M.HpyOki112ORF6410P (100% identity) | CATG | M.Hpy422ORF6425P |
| 6430 | pseudogene | |||
| 7165 | pseudogene | |||
| 7170 | R | HpyOki112ORF7155P (100% identity) | Hpy422ORFBP | |
| 7175 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7465 | DNA polymerase I | |||
| 7470 | S | S.HpyOK80ORFCP (100% identity) | S.Hpy422ORF7475P | |
| 7475 | RM | HpyOki112ORF7460P (100% identity) | Hpy422ORF7475P | |
| 7480 | amidophosphoribosyltransferase | |||
| 7725 | 29 aa hypothetical protein | |||
| 7730 | RM | HpyOK80ORFDP (100% identity) | Hpy422ORF7730P | |
| 7735 | DEAD/DEAH box helicase | |||
| 7900 | 68 aa hypothetical protein | |||
| 7905 | M | M.HpyOki112ORF7890P (100% identity) | TGCA | M.Hpy422ORF7905P |
| 7910 | R | HpyOki112ORF7890P (100% identity) | TGCA | Hpy422ORF7905P |
| 7915 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 360 | 59 aa hypothetical protein | |||
| 365 | R | HpyOK44ORFNP (91% identity) | Hpy422ORF370P | |
| 370 | M | M.HpyJA102ORF320P (94% identity) | M.Hpy422ORF370P | |
| 375 | endonuclease | |||
| 425 | rod shape-determining protein MreC | |||
| 430 | R | HpyOK85ORFNP (100% identity) | Hpy422ORF435P | |
| 435 | M | M.HpyOK85ORFNP (100% identity) | M.Hpy422ORF435P | |
| 440 | chemotaxis protein CheY | |||
| 7730 | type IIS restriction-modification protein | |||
| 7735 | R | HpyOki112ORF7725P (100% identity) | Hpy422ORF7740P | |
| 7740 | M | M.HpyOki112ORF7725P (100% identity) | M.Hpy422ORF7740P | |
| 7745 | ATP-dependent DNA helicase RecG | |||