Helicobacter pylori oki154 |
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Putative Helicobacter pylori oki154 RM systems
Ref: Satou,K. et al. unpublished
REBASE ref # 17432
Complete sequence: 1,599,700 bp
GenBank #: CP006823
REBASE acronym: Hpy154
Org_num: 12452
All begin HPOKI154_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2295 | polyphosphate kinase | |||
| 2305 | S | S.Hpy828ORF2295P (99% identity) | S.Hpy154ORF2310P | |
| 2310 | M | M.HpyOki128ORF2295P (98% identity) | M.Hpy154ORF2310P | |
| 2315 | R | Hpy828ORF2295P (97% identity) | Hpy154ORF2310P | |
| 2320 | 631 aa hypothetical protein | |||
| 4010 | pseudogene | |||
| ??? | S | S.HpyK111XI (93% identity) | S.Hpy154ORF4015P | |
| 4020 | cadmium transporter | |||
| 4325 | hydroxyethylthiazole kinase | |||
| 4330 | R | Hpy673ORF4325P (99% identity) | Hpy154ORF4345P | |
| ??? | S | S.HpyAR9XII (96% identity) | S.Hpy154ORF4345P | |
| 4345 | M | M.Hpy828ORF4330P (96% identity) | M.Hpy154ORF4345P | |
| 4350 | membrane protein | |||
| 7140 | 31 aa hypothetical protein | |||
| 7145 | S | S.Hpy828ORF7155P (100% identity) | S.Hpy154ORF7145P | |
| 7150 | formyltetrahydrofolate deformylase | |||
| 7675 | FAD-dependent thymidylate synthase | |||
| 7680 | S | S.Hpyfe113ORF3020P (97% identity) | S.Hpy154ORF7685P | |
| 7685 | M | M.Hpy828ORF7695P (99% identity) | M.Hpy154ORF7685P | |
| 7690 | R | Hpy828ORF7695P (98% identity) | Hpy154ORF7685P | |
| 7695 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 280 | 177 aa hypothetical protein | |||
| ??? | R | HpyJA105ORF7135P (99% identity) | TGCA | Hpy154ORF290P |
| 290 | M | 38 aa hypothetical protein | TGCA | M.Hpy154ORF290P |
| 295 | transposase IS605 | |||
| 300 | transposase IS200 | |||
| 305 | M | DNA methyltransferase | CCTC | M.Hpy154ORF305P |
| ??? | R | Hpy169ORF230P (96% identity) | CCTC | Hpy154ORF305P |
| 315 | pseudogene | |||
| 530 | malonyl CoA-ACP transacylase | |||
| 540 | R | HpyOK95ORFLP (99% identity) | GATC | Hpy154ORF545P |
| 545 | M | M.HpyOK95ORFLP (100% identity) | GATC | M.Hpy154ORF545P |
| 550 | alpha-1,2-fucosyltransferase | |||
| 1420 | exodeoxyribonuclease VII large subunit | |||
| 1425 | M | M.Hpy828ORF1410P (100% identity) | TCGA | M.Hpy154ORF1425P |
| 1430 | 203 aa hypothetical protein | |||
| 1430 | 203 aa hypothetical protein | |||
| 1435 | R | HpyJA105ORF6075P (97% identity) | Hpy154ORF1440P | |
| 1440 | M | M.HpyAR3III (97% identity) | CCGG | M.Hpy154ORF1440P |
| 1445 | molecular chaperone ClpB | |||
| 1675 | 293 aa hypothetical protein | |||
| 1680 | R | Hpy673ORF1675P (99% identity) | CTNAG | Hpy154ORF1685P |
| 1685 | M | M.HpyOK68ORFMP (100% identity) | CTNAG | M.Hpy154ORF1685P |
| 1690 | 125 aa hypothetical protein | |||
| 2385 | membrane protein | |||
| 2390 | M | M.Hpy673ORF2380P (100% identity) | ATTAAT | M.Hpy154ORF2390P |
| 2395 | glycosyltransferase 9 family protein | |||
| 2400 | GTP-binding protein | |||
| 2405 | M | M.HpyJA106II (100% identity) | ACNGT | M.Hpy154ORF2405P |
| 2410 | R | Hpy828ORF2390P (100% identity) | ACNGT | Hpy154ORF2405P |
| 2415 | type II restriction endonuclease | |||
| 2410 | type II restriction endonuclease | |||
| 2415 | M | type II restriction endonuclease | ACGT | M.Hpy154ORF2415P |
| 2420 | 36 aa hypothetical protein | |||
| 2610 | integrase | |||
| ??? | M | DNA methyltransferase | ACGT | M.Hpy154ORF2615P |
| 2620 | pseudogene | |||
| 2730 | DNA gyrase subunit B | |||
| 2735 | M | M.Hpy673ORF2710P (99% identity) | M.Hpy154ORF2735P | |
| 2740 | R | Hpy673ORF2710P (100% identity) | Hpy154ORF2735P | |
| 2745 | membrane protein | |||
| 3405 | glycerol-3-phosphate dehydrogenase subunit C | |||
| ??? | RM | Hpy828ORF3400P (93% identity) | Hpy154ORFAP | |
| 3420 | membrane protein | |||
| 3495 | polysaccharide biosynthesis protein | |||
| 3500 | M | M.HpyOki128ORF3270P (100% identity) | CCNNGG | M.Hpy154ORF3500P |
| 3505 | R | Hpy828ORF3495P (100% identity) | CCNNGG | Hpy154ORF3500P |
| 3510 | polysaccharide biosynthesis protein | |||
| 4620 | flagellar hook protein FlgE | |||
| 4625 | R | HpyOki128ORF4365P (100% identity) | GTNNAC | Hpy154ORF4630P |
| 4630 | M | M.HpyJA107IX (100% identity) | GTNNAC | M.Hpy154ORF4630P |
| 4635 | ATP-dependent DNA helicase | |||
| 5390 | biotin carboxylase | |||
| 5395 | M | M.Hpy828ORF5390P (100% identity) | TCNNGA | M.Hpy154ORF5395P |
| 5400 | R | Hpy828ORF5390P (100% identity) | TCNNGA | Hpy154ORF5395P |
| 5405 | Laminin subunit alpha-2 precursor | |||
| 5580 | 144 aa hypothetical protein | |||
| 5585 | M | M.HpyJA106XIV (99% identity) | GCGC | M.Hpy154ORF5585P |
| 5590 | flgM protein | |||
| 6080 | hydrolase | |||
| 6085 | M | M.Hpy673ORF6065P (100% identity) | CATG | M.Hpy154ORF6085P |
| 6090 | 59 aa hypothetical protein | |||
| 6835 | peptidase S41 | |||
| 6840 | R | HpyJA106ORF290P (100% identity) | GANTC | Hpy154ORF6845P |
| 6845 | M | M.Hpy828ORF6855P (100% identity) | GANTC | M.Hpy154ORF6845P |
| 6850 | DNA methyltransferase | |||
| 6845 | DNA methyltransferase | |||
| 6850 | RM | HpySW27ORF6375P (80% identity) | Hpy154ORF6850P | |
| 6855 | nicotinate-nucleotide pyrophosphorylase | |||
| 7050 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7055 | M | M.Hpy828ORF7065P (100% identity) | GAATTC | M.Hpy154ORF7055P |
| 7060 | R | Hpy23ORF1309P (100% identity) | GAATTC | Hpy154ORF7055P |
| 7065 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7355 | DNA polymerase I | |||
| 7360 | S | S2.HpyOK316ORFFP (95% identity) | S.Hpy154ORF7365P | |
| ??? | RM | Hpy828ORF7375P (75% identity) | Hpy154ORF7365P | |
| 7370 | amidophosphoribosyltransferase | |||
| 7495 | permease | |||
| 7500 | M | M1.HpyJA106IV (100% identity) | CCATC | M1.Hpy154ORF7500P |
| 7505 | M | M2.Hpy673ORF7490P (100% identity) | GATGG | M2.Hpy154ORF7500P |
| 7510 | R | Hpy673ORF7490P (100% identity) | Hpy154ORF7500P | |
| 7515 | membrane protein | |||
| 7600 | pseudogene | |||
| ??? | RM | Hpy673ORFAP (99% identity) | Hpy154ORF7610P | |
| 7615 | DEAD/DEAH box helicase | |||
| 7775 | 68 aa hypothetical protein | |||
| 7780 | M | M.Hpy673ORF7765P (98% identity) | TGCA | M.Hpy154ORF7780P |
| 7785 | DNA methyltransferase | |||
| 7780 | type II methylase | |||
| 7785 | M | M2.HpyOki128ORF6200P (99% identity) | CCTC | M2.Hpy154ORF7785P |
| 7790 | M | M1.HpyME02IX (98% identity) | CCTC | M1.Hpy154ORF7785P |
| 7795 | agmatine deiminase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4155 | 145 aa hypothetical protein | |||
| 4160 | R | Hpy673ORF4150P (99% identity) | Hpy154ORF4165P | |
| 4165 | M | M.HpyOK314ORFOP (96% identity) | M.Hpy154ORF4165P | |
| 4170 | osmoprotection protein (proWX) | |||
| 6970 | endonuclease | |||
| 6975 | M | M.Hpy673ORF6960P (99% identity) | M.Hpy154ORF6975P | |
| 6980 | R | Hpy673ORF6960P (99% identity) | Hpy154ORF6975P | |
| 6990 | biotin synthase | |||
| ??? | 1180 aa hypothetical protein | |||
| 7615 | R | HpyOK95ORFEP (100% identity) | Hpy154ORF7620P | |
| 7620 | M | M.HpyOK68ORFFP (99% identity) | M.Hpy154ORF7620P | |
| 7625 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2780 | glutamine synthetase | |||
| 2785 | R | HpyOK13GmrSDP (87% identity) | Hpy154GmrSDP | |
| 2790 | 50S ribosomal protein L9 | |||