Helicobacter pylori oki102 |
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Putative Helicobacter pylori oki102 RM systems
Ref: Satou,K. et al. unpublished
REBASE ref # 17432
Complete sequence: 1,633,212 bp
GenBank #: CP006820
REBASE acronym: Hpy102
Org_num: 12449
All begin HPOKI102_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2490 | polyphosphate kinase | |||
| 2500 | S | S.Hpyfe38ORF4970P (98% identity) | S.Hpy102ORF2505P | |
| 2505 | M | M.HpyOK80ORFQP (99% identity) | M.Hpy102ORF2505P | |
| 2510 | R | HpyIS7ORF3750P (91% identity) | Hpy102ORF2505P | |
| 2515 | 631 aa hypothetical protein | |||
| 2780 | membrane protein | |||
| 2785 | M | M.Hpy898ORF2785P (97% identity) | M.Hpy102ORF2785P | |
| 2790 | S | S.Hpy102ORF3095P (98% identity) | S.Hpy102ORF2785P | |
| 2795 | R | HpyJA102IVP (99% identity) | Hpy102ORF2785P | |
| 2800 | hydroxyethylthiazole kinase | |||
| 3090 | cadmium transporter | |||
| 3095 | S | S.HpyJ009ORF2990P (98% identity) | S.Hpy102ORF3095P | |
| 3105 | membrane protein | |||
| 7765 | cag pathogenicity island protein | |||
| 7770 | S | S.HpyOK80ORFFP (98% identity) | S.Hpy102ORF7775P | |
| 7775 | M | M.HpyOK80ORFFP (100% identity) | M.Hpy102ORF7775P | |
| 7780 | R | HpyOki112ORF7795P (99% identity) | Hpy102ORF7775P | |
| 7785 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 270 | pseudogene | |||
| 275 | M | M.HpyOK88ORFCP (77% identity) | GAATTC | M.Hpy102ORF275P |
| 280 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 485 | nicotinate-nucleotide pyrophosphorylase | |||
| 490 | RM | Hpy238ORF275P (85% identity) | Hpy102ORF490P | |
| 495 | 42 aa hypothetical protein | |||
| 500 | agmatine deiminase | |||
| 505 | M | M1.HpyJA102VI (100% identity) | CCTC | M1.Hpy102ORF505P |
| 510 | M | M2.HpyJA102VIP (100% identity) | CCTC | M2.Hpy102ORF505P |
| 515 | R | HpyJA102VIP (99% identity) | CCTC | Hpy102ORF505P |
| 520 | type II restriction endonuclease | |||
| 515 | restriction endonuclease | |||
| 520 | M | M.HpyOki112ORF515P (99% identity) | GTSAC | M.Hpy102ORF520P |
| 525 | R | HpyOK79ORFNP (99% identity) | GTSAC | Hpy102ORF520P |
| 530 | type II restriction endonuclease | |||
| 745 | HrgA protein | |||
| 750 | M | M.HpyJA102ORF670P (99% identity) | GATC | M.Hpy102ORF750P |
| 755 | alpha-1,2-fucosyltransferase | |||
| 1600 | exodeoxyribonuclease VII large subunit | |||
| 1605 | M | M.Hpy898ORF1605P (100% identity) | TCGA | M.Hpy102ORF1605P |
| 1610 | 204 aa hypothetical protein | |||
| 1610 | 204 aa hypothetical protein | |||
| ??? | R | HpyJA102VP (58% identity) | CCGG | Hpy102ORF1620P |
| 1620 | M | M.HpyJA102V (100% identity) | CCGG | M.Hpy102ORF1620P |
| 1625 | pseudogene | |||
| 1855 | 293 aa hypothetical protein | |||
| 1860 | R | HpyJA102VIIP (99% identity) | CTNAG | Hpy102ORF1865P |
| 1865 | M | M.HpyOki112ORF1850P (100% identity) | CTNAG | M.Hpy102ORF1865P |
| 1870 | 122 aa hypothetical protein | |||
| 2575 | membrane protein | |||
| 2580 | M | M.HpyOK85ORFTP (100% identity) | ATTAAT | M.Hpy102ORF2580P |
| 2585 | glycosyltransferase 9 family protein | |||
| 2590 | GTP-binding protein | |||
| 2595 | M | M.HpyOK312ORFIP (100% identity) | ACNGT | M.Hpy102ORF2595P |
| 2600 | R | HpyOki112ORF2585P (100% identity) | ACNGT | Hpy102ORF2595P |
| 2605 | DNA methyltransferase | |||
| 2600 | type II restriction endonuclease | |||
| 2605 | M | M.HpyJA106ORF2445P (98% identity) | ACGT | M.Hpy102ORF2605P |
| 2610 | R | HpyOK85ORFJP (100% identity) | ACGT | Hpy102ORF2605P |
| 2615 | 71 aa hypothetical protein | |||
| 3665 | 485 aa hypothetical protein | |||
| ??? | RM | 258 aa hypothetical protein HPHPA9_1167 | Hpy102ORFABP | |
| ??? | RM | HpyOK79ORFVP (93% identity) | Hpy102ORFAAP | |
| 3680 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 4755 | flagellar hook protein FlgE | |||
| 4760 | R | HpyL006VIIP (90% identity) | GTNNAC | Hpy102ORF4765P |
| 4765 | M | M.HpyJA102XIII (100% identity) | GTNNAC | M.Hpy102ORF4765P |
| 4770 | ATP-dependent DNA helicase | |||
| 5685 | Biotin carboxylase of acetyl-CoA carboxylase | |||
| ??? | M | M.HpyJA102ORF5395P (85% identity) | TCNNGA | M.Hpy102ORF5690P |
| 5695 | R | HpyJA102ORF5395P (90% identity) | Hpy102ORF5690P | |
| 5700 | Laminin subunit alpha-2 precursor | |||
| 5905 | 144 aa hypothetical protein | |||
| 5910 | M | M.HpyOki112ORF5935P (100% identity) | GCGC | M.Hpy102ORF5910P |
| 5915 | flgM protein | |||
| 6395 | hydrolase | |||
| 6400 | M | M.HpyJA102I (100% identity) | CATG | M.Hpy102ORF6400P |
| 6405 | pseudogene | |||
| 7135 | pseudogene | |||
| 7140 | R | HpyOki112ORF7155P (99% identity) | GAATTC | Hpy102ORF7135P |
| 7145 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7430 | DNA polymerase I | |||
| 7435 | S | S.HpyOki112ORF7460P (100% identity) | S.Hpy102ORF7440P | |
| 7440 | RM | HpyJA102ORF7060P (100% identity) | Hpy102ORF7440P | |
| 7445 | amidophosphoribosyltransferase | |||
| 7680 | 97 aa hypothetical protein | |||
| ??? | RM | Hpy24AORFB1P (88% identity) | Hpy102ORF7685P | |
| 7700 | DEAD/DEAH box helicase | |||
| 7860 | 68 aa hypothetical protein | |||
| 7865 | M | M.HpyOki112ORF7890P (100% identity) | TGCA | M.Hpy102ORF7865P |
| 7870 | R | HpyOki112ORF7890P (100% identity) | TGCA | Hpy102ORF7865P |
| 7875 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 355 | type III restriction endonuclease subunit R | |||
| 360 | R | Hpy422ORF370P (99% identity) | Hpy102ORF365P | |
| 365 | M | M.HpyJA102ORF320P (99% identity) | M.Hpy102ORF365P | |
| 370 | endonuclease | |||
| 420 | rod shape-determining protein MreC | |||
| 425 | R | HpyJA102ORF380P (98% identity) | Hpy102ORF430P | |
| 430 | M | M.HpyJA102ORF380P (99% identity) | M.Hpy102ORF430P | |
| 435 | chemotaxis protein CheY | |||
| ??? | 1175 aa hypothetical protein | |||
| 7700 | R | HpyOK313ORFIP (99% identity) | Hpy102ORF7705P | |
| 7705 | M | M.Hpyfe93ORF40P (97% identity) | M.Hpy102ORF7705P | |
| 7710 | ATP-dependent DNA helicase RecG | |||