Rubellimicrobium thermophilum DSM 16684 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Rubellimicrobium thermophilum DSM 16684 RM systems
Ref: Fiebig,A. et al. Stand Genomic Sci 8 (3), 480-490 (2013)
REBASE ref # 17167
Contig set: 3,159,235 bp
GenBank #: AOLV00000000 (NZ_AOLV00000000)
REBASE acronym: Rth16684
Org_num: 12264
All begin ruthe_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2496 | metal-dependent hydrolase | |||
| 2497 | R | PspS343ORF5995P (97% identity) | Rth16684ORF2501P | |
| 2498 | 153 aa hypothetical protein | |||
| 2499 | 233 aa hypothetical protein | |||
| 2500 | S | S2.Pph9175ORF19465P (55% identity) | S1.Rth16684ORF2501P | |
| 2501 | M | M.PspS343ORF5995P (94% identity) | M.Rth16684ORF2501P | |
| 2502 | S | S1.PspS343ORF5995P (92% identity) | S2.Rth16684ORF2501P | |
| 2503 | 128 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2975 | T/G mismatch-specific endonuclease | |||
| 2976 | M | M.PspS343ORF10410P (95% identity) | M.Rth16684ORF2976P | |
| 2978 | 302 aa hypothetical protein | |||
| 3015 | 94 aa hypothetical protein | |||
| 3016 | M | M.RbaPBA2bORF5150P (92% identity) | M.Rth16684ORF3016P | |
| 3017 | Site-specific DNA methylase | |||
| 3016 | DNA modification methylase | |||
| 3017 | M | M.PspOMVI (91% identity) | GATC | M.Rth16684ORF3017P |
| 3018 | 73 aa hypothetical protein | |||
| 27 | Superfamily II DNA/RNA helicase, SNF2 family | |||
| 28 | RM | PcoRK1ORF5265P (69% identity) | Rth16684ORF28P | |
| 29 | HNH endonuclease | |||
| 1868 | RNase HII | |||
| 1869 | M | M.Rme19309ORF3730P (81% identity) | GANTC | M.Rth16684ORF1869P |
| 1870 | alkane 1-monooxygenase | |||
| 2520 | 126 aa hypothetical protein | |||
| 2521 | M | M.Dal42ORF2587P (92% identity) | M.Rth16684ORF2521P | |
| 2522 | 214 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3057 | Integrase core domain protein | |||
| 3058 | M | M.Ade44594ORF3749P (30% identity) | M.Rth16684ORF3058P | |
| 3059 | 240 aa hypothetical protein | |||
| 3060 | R | PspM09ORFCP (89% identity) | Rth16684ORF3058P | |
| 3061 | 22 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 201 | R | Ppa2944McrCP (95% identity) | Rth16684McrCP | |
| 202 | R | RbaNRL2McrBP (66% identity) | Rth16684McrBP | |
| 203 | 114 aa hypothetical protein | |||