Rhodobacter capsulatus R121 |
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Putative Rhodobacter capsulatus R121 RM systems
Ref: Ding,H. et al. Genome Announc 2 (1), e00050-14 (2014)
REBASE ref # 17142
Contig set: 3,766,673 bp
GenBank #: AYQC00000000 (NZ_AYQC00000000)
REBASE acronym: RcaR121
Org_num: 12245
All begin U717_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5960 | integrase | |||
| 5965 | R | RcaY262ORF5965P (100% identity) | RcaR121ORF5970P | |
| 5970 | M | M.RcaY262ORF5965P (100% identity) | M.RcaR121ORF5970P | |
| 5975 | 308 aa hypothetical protein | |||
| ??? | S | S.RcaY262ORF5965P (100% identity) | S.RcaR121ORF5970P | |
| 5995 | ATPase AAA | |||
| 11115 | 219 aa hypothetical protein | |||
| 11120 | R | RcaY262ORF11125P (100% identity) | RcaR121ORF11125P | |
| ??? | S | S.RcaY262ORF11125P (100% identity) | S.RcaR121ORF11125P | |
| 11125 | M | M.RcaY262ORF11125P (100% identity) | M.RcaR121ORF11125P | |
| 11130 | DNA invertase | |||
| 7995 | 547 aa hypothetical protein | |||
| 8000 | R | RcaY262ORF8005P (100% identity) | RcaR121ORF8005P | |
| 8005 | M | M.RcaY262ORF8005P (100% identity) | M.RcaR121ORF8005P | |
| 8010 | S | S.RcaY262ORF8005P (100% identity) | S.RcaR121ORF8005P | |
| 8015 | 312 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1850 | MarR family transcriptional regulator | |||
| 1855 | M | M.RcaYW1ORF1750P (100% identity) | GANTC | M.RcaR121ORF1855P |
| 1860 | ribonuclease HII | |||
| 5920 | 234 aa hypothetical protein | |||
| 5925 | M | M1.RcaY262ORF5920P (100% identity) | M1.RcaR121ORF5925P | |
| 5930 | M | M2.RcaY262ORF5920P (100% identity) | M2.RcaR121ORF5925P | |
| 5935 | 173 aa hypothetical protein | |||
| 4395 | 64 aa hypothetical protein | |||
| ??? | M | M.RphNL1ORFAP (100% identity) | M.RcaR121ORF4400P | |
| 4405 | 77 aa hypothetical protein | |||
| 15135 | 499 aa hypothetical protein | |||
| 15140 | M | M.RcaY262ORF15125P (100% identity) | AGCT | M.RcaR121ORF15140P |
| 15145 | 59 aa hypothetical protein | |||
| 15255 | 396 aa hypothetical protein | |||
| 15260 | M | M1.RcaY262ORF15245P (100% identity) | M1.RcaR121ORF15265P | |
| 15265 | M | M2.RcaY262ORF15245P (100% identity) | M2.RcaR121ORF15265P | |
| 15275 | sulfate transporter subunit | |||
| 11500 | 115 aa hypothetical protein | |||
| ??? | M | DNA methyltransferase | M.RcaR121ORF11505P | |
| 11510 | 91 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7715 | 361 aa hypothetical protein | |||
| 7720 | M | M.RcaY262ORF7715P (100% identity) | M.RcaR121ORF7720P | |
| 7725 | R | RcaY262ORF7715P (100% identity) | RcaR121ORF7720P | |
| 7730 | recombinase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17010 | heme ABC transporter ATP-binding protein | |||
| ??? | R | RcaY262McrB2P (100% identity) | RcaR121McrB2P | |
| 17020 | elongation factor 4 | |||
| 7820 | DeoR family transcriptional regulator | |||
| ??? | R | RcaY262McrBP (100% identity) | RcaR121McrBP | |
| 7830 | R | RcaY262McrCP (100% identity) | RcaR121McrCP | |
| 7835 | 240 aa hypothetical protein | |||