Ref: Ding,H. et al. Genome Announc 2 (1), e00050-14 (2014)

REBASE ref # 17142

Contig set: 3,850,334 bp

GenBank #: AYQB00000000 (NZ_AYQB00000000)

REBASE acronym: RcaY262

Org_num: 12244

 

All begin U715_

Type I
ORF Gene Most similar Specificity Name
 
5955 integrase
5960 R RcaSBORF952P (1% identity) RcaY262ORF5965P
5965 M M.RcaSBORF952P (1% identity) M.RcaY262ORF5965P
5970 308 aa hypothetical protein
??? S S.RcaSBORF952P (1% identity) S.RcaY262ORF5965P
5990 ATPase AAA
 
7995 547 aa hypothetical protein
8000 R RcaSBORF1325P (1% identity) RcaY262ORF8005P
8005 M M.RcaSBORF1325P (1% identity) M.RcaY262ORF8005P
8010 S S.RcaSBORF1325P (1% identity) S.RcaY262ORF8005P
8015 312 aa hypothetical protein
 
11115 219 aa hypothetical protein
11120 R RcaSBORF1930P (1% identity) RcaY262ORF11125P
??? S S.RcaSBORF1930P (1% identity) S.RcaY262ORF11125P
11125 M M.RcaSBORF1930P (1% identity) M.RcaY262ORF11125P
11130 DNA invertase
Type II
ORF Gene Most similar Specificity Name
 
1845 MarR family transcriptional regulator
1850 M M.RcaYW1ORF1750P (1% identity) GANTC M.RcaY262ORF1850P
1855 ribonuclease HII
 
5915 234 aa hypothetical protein
5920 M M.RcaSBORF943P (1% identity) M1.RcaY262ORF5920P
5925 M M.RcaSBORF944P (1% identity) M2.RcaY262ORF5920P
5930 173 aa hypothetical protein
 
15120 499 aa hypothetical protein
15125 M M.RcaSBORF2717P (1% identity) AGCT M.RcaY262ORF15125P
15130 59 aa hypothetical protein
 
15240 396 aa hypothetical protein
15245 M M1.RcaSBORF2740P (1% identity) M1.RcaY262ORF15245P
15250 M M2.RcaSBORF2740P (1% identity) M2.RcaY262ORF15245P
15260 sulfate transporter subunit
 
4385 64 aa hypothetical protein
??? M M.RphNL1ORFAP (1% identity) M.RcaY262ORF4390P
4395 77 aa hypothetical protein
 
11505 115 aa hypothetical protein
??? M M.RcaSBORF2003P (1% identity) M.RcaY262ORF11510P
11515 91 aa hypothetical protein
Type III
ORF Gene Most similar Specificity Name
 
7710 361 aa hypothetical protein
7715 M M.RcaSBORF1260P (1% identity) M.RcaY262ORF7715P
7720 R RcaSBORF1260P (1% identity) RcaY262ORF7715P
7725 recombinase
Type IV
ORF Gene Most similar Specificity Name
 
7820 29 aa hypothetical protein
??? R RcaSBMcrBP (1% identity) RcaY262McrBP
7830 R RcaSBMcrCP (1% identity) RcaY262McrCP
7835 240 aa hypothetical protein
 
17000 heme ABC transporter ATP-binding protein
??? R RcaSBMcrB2P (1% identity) RcaY262McrB2P
17010 elongation factor 4