Pseudomonas pseudoalcaligenes CECT 5344 |
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Putative Pseudomonas pseudoalcaligenes CECT 5344 RM systems
Ref: Wibberg,D. et al. unpublished
REBASE ref # 17286
Complete sequence: 4,686,340 bp
GenBank #: HG916826
REBASE acronym: Pps5344
Org_num: 12218
All begin BN5_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3166 | Chromodomain-helicase-DNA-binding protein 7 | |||
| ??? | R | Pae85ORFDP (98% identity) | GCCANNNNNNTTA | Pps5344IIIP |
| 3169 | McrBC 5-methylcytosine restriction system | |||
| 3170 | GTPase subunit of restriction endonucleas | |||
| ??? | S | S.Pst875ORF7305P (100% identity) | GCCANNNNNNTTA | S.Pps5344III |
| 3172 | M | M.Psp3P5ORF4610P (99% identity) | GCCANNNNNNTTA | M.Pps5344III |
| 3173 | 235 aa hypothetical protein | |||
| 3557 | SMC domain-containing protein | |||
| 3558 | S | S.PspNIH3I (98% identity) | GAGNNNNNNCTGG | S.Pps5344II |
| 3559 | 34 aa hypothetical protein | |||
| 3560 | M | M.SmaT5020ORFCP (100% identity) | GAGNNNNNNCTGG | M.Pps5344II |
| 3561 | transcriptional regulator | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 912 | dihydrodipicolinate reductase | |||
| 913 | R | PspDV1ORF4795P (100% identity) | Pps5344ORF914P | |
| 914 | M | M.Pol4132ORF17730P (99% identity) | M.Pps5344ORF914P | |
| 915 | carbamoyl-phosphate synthase, small subunit | |||
| 1029 | 319 aa hypothetical protein | |||
| 1030 | R | SspI (82% identity) | AATATT | Pps5344IP |
| 1031 | M | M.SspI (76% identity) | AATATT | M.Pps5344I |
| 1032 | 117 aa hypothetical protein | |||
| 1739 | protein y4hO | |||
| 1740 | M | M.PkhODT83ORF12205P (98% identity) | GGCC | M.Pps5344ORF1740P |
| 1741 | phosphoribosyl-ATP diphosphatase | |||
| 1976 | 185 aa hypothetical protein | |||
| 1977 | M | M.PpuRRORF11P (98% identity) | M.Pps5344ORF1977P | |
| 1978 | DNA topoisomerase III | |||
| 4075 | prophage CPS-53 integrase | |||
| 4076 | RM | PspDV1ORF21245P (99% identity) | Pps5344ORF4076P | |
| 4077 | Transcriptional repressor rghR | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1775 | amidohydrolase | |||
| 1776 | R | Pol10860ORF2182P (99% identity) | Pps5344ORF1777P | |
| 1777 | methyltransferase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 76 | extracellular solute-binding protein | |||
| 77 | R | Pme10692Mrr2P (99% identity) | Pps5344MrrP | |
| 78 | LysR family transcriptional regulator | |||
| ??? | DEAD/DEAH box helicase | |||
| 3169 | R | Psp3P5McrCP (100% identity) | Pps5344McrCP | |
| 3170 | R | Psp3P5McrBP (100% identity) | Pps5344McrBP | |
| 3171 | restriction modification system DNA specificity | |||