Escherichia coli O145:H28 RM13514 |
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Putative Escherichia coli O145:H28 RM13514 RM systems
Ref: Cooper,K.K. et al. unpublished
REBASE ref # 16989
| Sequence length: | GenBank #: | |
| Chromosome: | 5,585,613 bp | CP006027 |
| plasmid pO145-13514: | 87,120 bp | CP006028 |
REBASE acronym: Eco13514
Org_num: 12042
All begin ECRM13514_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2426 | IS600 orfA | |||
| 2427 | R | EcoSO173ORF28895P (89% identity) | GATGNNNNNNTAC | Eco13514ORFBP |
| 2428 | 594 aa hypothetical protein | |||
| 2429 | metal-binding protein | |||
| 2430 | S | S.EcoSO173ORF28895P (100% identity) | GATGNNNNNNTAC | S.Eco13514ORFBP |
| ??? | M | M.EcoE115ORF2574P (100% identity) | GATGNNNNNNTAC | M.Eco13514ORFBP |
| 2432 | IS629 orfA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 821 | gene 54 protein | |||
| 822 | M | M.EcoTrh52ORF21975P (100% identity) | GATC | M.Eco13514ORF3488P |
| 823 | Phage NinB DNA recombination | |||
| 2046 | 39 aa hypothetical protein | |||
| 2047 | M | M.EcoDEC11CORF5871P (100% identity) | M.Eco13514ORF2047P | |
| 2048 | 65 aa unknown protein encoded by prophage CP-933O | |||
| 2515 | Permease of the drug/metabolite transporter | |||
| 2516 | V | V.SsoSE61DcmP (100% identity) | V.Eco13514DcmP | |
| 2517 | M | M.EcoXJ63DcmP (100% identity) | CCWGG | M.Eco13514DcmP |
| 2518 | metal-dependent phosphohydrolase | |||
| 2699 | Phage NinF | |||
| ??? | M | M.EcoPM7ORF21570P (100% identity) | GATC | M.Eco13514ORFAP |
| 2701 | Phage NinB DNA recombination | |||
| 3158 | repressor protein CI | |||
| 3159 | M | M.EcoE2863ORF2986P (100% identity) | CTGCAG | M.Eco13514I |
| 3160 | R | EcoF690ORF30660P (100% identity) | CTGCAG | Eco13514IP |
| 3161 | GepA protein | |||
| 3181 | 118 aa hypothetical protein | |||
| 3182 | M | M.Sso1099ORF735P (100% identity) | GATC | M.Eco13514ORF3182P |
| 3183 | 70 aa hypothetical protein | |||
| 4214 | DNA-binding protein Fis | |||
| 4215 | M | M.SflWW1ORF2205P (100% identity) | ATGCAT | M.Eco13514ORF4215P |
| 4216 | periplasmic protein | |||
| 4330 | Ribulose-phosphate 3-epimerase | |||
| 4331 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco13514DamP |
| 4332 | Inner membrane protein DamX | |||
| 4993 | 150 aa hypothetical protein | |||
| 4994 | M | M.SflFF35ORF20P (100% identity) | GGCC | M.Eco13514ORF4994P |
| 4995 | 330 aa hypothetical protein | |||
| 5189 | 38 aa hypothetical protein | |||
| ??? | M | M.EcoSO179ORF27060P (100% identity) | M.Eco13514ORF5190P | |
| 5191 | 166 aa hypothetical protein | |||
| 5204 | 83 aa hypothetical protein | |||
| 5205 | M | M.EcoSTEC411ORF14855P (100% identity) | GATC | M.Eco13514ORF5205P |
| 5206 | phage repressor protein | |||
| 5544 | ATP-dependent helicase | |||
| 5545 | RM | EcoSO172ORF1005P (100% identity) | Eco13514ORF5545AP | |
| 5546 | IS629 orfA | |||
| 5547 | Transposase | |||
| ??? | RM | primase-helicase zinc-binding domain-containing protein | Eco13514ORF5545BP | |
| plasmid pO145-13514 | ||||
| 5729 | 41 aa hypothetical protein | |||
| 5730 | M | M.EcopO26ORF185P (100% identity) | M.Eco13514ORF5730P | |
| 5731 | cytoplasmic protein | |||