Sodalis pierantonius SOPE (endosymbiont of Sitophilus oryzae) |
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Putative Sodalis pierantonius SOPE (endosymbiont of Sitophilus oryzae) RM systems
Ref: Oakeson,K.F. et al. Genome Biol Evol (2014) In press
REBASE ref # 16990
Complete sequence: 4,513,140 bp
GenBank #: CP006568
REBASE acronym: SpiSO
Org_num: 12044
All begin SOPEG_, SOPEG_ps
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 211 | transposase ISSoEn1, IS5 ssgr IS903 family | |||
| 212 | M | pseudogene | M.SpiSOORF212P | |
| 213 | 211 aa hypothetical protein | |||
| 218 | 163 aa hypothetical protein | |||
| 219 | M | pseudogene | M.SpiSOORF219P | |
| 220 | 81 aa hypothetical protein | |||
| 233 | transposase ISSoEn1, IS5 ssgr IS903 family | |||
| 234 | M | pseudogene | M.SpiSOORF234P | |
| 235 | 101 aa hypothetical protein | |||
| 270 | ribulose-phosphate 3-epimerase | |||
| 271 | M | M.SspHS1DamP (99% identity) | GATC | M.SpiSODamP |
| 272 | DamX an inner membrane protein involved in bile | |||
| 656 | pseudogene | |||
| 657 | M | M.SpiSOORF1153P (100% identity) | M.SpiSOORF657P | |
| 658 | transposase ISSoEn3, IS21 family | |||
| 711 | transposase ISSoEn2, IS256 family | |||
| ??? | M | hypothetical protein | M.SpiSOORF712P | |
| 713 | pseudogene | |||
| 1152 | Glutamate Aspartate periplasmic binding protein | |||
| 1153 | M | M.SpiSOORF657P (100% identity) | M.SpiSOORF1153P | |
| 1154 | pseudogene | |||
| 1306 | peptidase U32 | |||
| 1307 | M | 203 aa hypothetical protein | M.SpiSOORF1307P | |
| 1308 | transposase ISSoEn3, IS21 family | |||
| 1960 | 6-phosphogluconate dehydrogenase | |||
| 1961 | M | M.SpiSOORF3177P (90% identity) | M.SpiSOORF1961P | |
| 1962 | transposase | |||
| 2110 | anaerobic ribonucleoside triphosphate reductase | |||
| 2111 | M | M.SspHS1ORF3836P (96% identity) | TTCGAA | M.SpiSOORF2111P |
| 2112 | R | SspHS1ORF3836P (96% identity) | TTCGAA | SpiSOORF2111P |
| 2113 | yjgF | |||
| 2162 | 77 aa hypothetical protein | |||
| 2163 | M | M.SpiSOORF2285P (72% identity) | GATC | M.SpiSOORF2163P |
| 2164 | ribonuclease (polynucleotidyl | |||
| 2214 | pseudogene | |||
| 2215 | M | M.SpiSOORF3575P (80% identity) | GATC | M.SpiSOORF2215P |
| 2216 | pseudogene | |||
| 2284 | transposase ISSoEn2, IS256 family | |||
| 2285 | M | 261 aa hypothetical protein | GATC | M.SpiSOORF2285P |
| 2286 | 130 aa hypothetical protein | |||
| 2791 | pseudogene | |||
| ??? | M | 183 aa hypothetical protein | M.SpiSOORF2792P | |
| 2793 | Ferrous iron transport permease EfeU | |||
| 3176 | dehydrogenase | |||
| 3177 | M | D12 class N6 adenine-specific DNA | M.SpiSOORF3177P | |
| 3178 | transposase ISSoEn1, IS5 ssgr IS903 family | |||
| 3302 | transposase ISSoEn1, IS5 ssgr IS903 family | |||
| 3303 | M | pseudogene | M.SpiSOORF3303P | |
| 3304 | 402 aa hypothetical protein | |||
| 3509 | 249 aa hypothetical protein | |||
| 3510 | M | pseudogene | M.SpiSOORF3510P | |
| 3511 | pseudogene | |||
| 3532 | pseudogene | |||
| ??? | M | PREDICTED: modification methylase DpnIIA-like | M.SpiSOORF3533P | |
| 3534 | pseudogene | |||
| 3558 | pseudogene | |||
| 3559 | M | M.SpiSOORF657P (99% identity) | M.SpiSOORF3559P | |
| 3560 | transposase | |||
| 3574 | pseudogene | |||
| 3575 | M | M.SpiSOORF2215P (80% identity) | GATC | M.SpiSOORF3575P |
| 3576 | ribonuclease (polynucleotidyl | |||
| 3945 | uronate isomerase | |||
| 3946 | M | pseudogene | M.SpiSOORF3946P | |
| 3947 | pseudogene | |||