Lactobacillus fermentum 3872 |
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Putative Lactobacillus fermentum 3872 RM systems
Ref: Karlyshev,A.V. et al. unpublished
REBASE ref # 16750
| Sequence length: | GenBank #: | |
| Chromosome: | 2,207,008 bp | AVCT00000000 (NZ_AVCT00000000) |
| Chromosome: | 2,297,851 bp | CP011536 |
REBASE acronym: Lfe3872
Org_num: 11711
All begin N573_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8910 | transposase IS256 | |||
| 8915 | R | LplBC015ORF16595P (98% identity) | Lfe3872ORF8920P | |
| 8920 | M | M.Lbr15fORF9780P (99% identity) | M.Lfe3872ORF8920P | |
| 8925 | S | S.LarL12ORF14885P (67% identity) | S.Lfe3872ORF8920P | |
| 8930 | 98 aa hypothetical protein | |||
| Chromosome | ||||
| 4210 | transposase | |||
| 4215 | S | S.LarL12ORF14885P (67% identity) | S.Lfe3872ORF8920P | |
| 4220 | M | M.Lbr15fORF9780P (99% identity) | M.Lfe3872ORF8920P | |
| 4225 | R | LplBC015ORF16595P (98% identity) | Lfe3872ORF8920P | |
| 4230 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6755 | RM | Lfe3872ORF2130P (97% identity) | Lfe3872ORF6755P | |
| 6760 | integrase | |||
| 6760 | integrase | |||
| 6765 | RM | Lfe3872ORF2120P (100% identity) | Lfe3872ORF6765P | |
| 6770 | 1230 aa hypothetical protein | |||
| 5410 | terminase | |||
| 5415 | M | M.Lfe179ORF8525P (100% identity) | M.Lfe3872ORF5415P | |
| 5420 | 206 aa hypothetical protein | |||
| Chromosome | ||||
| 2115 | ATPase family protein | |||
| 2120 | RM | Lfe3872ORF6765P (100% identity) | Lfe3872ORF2120P | |
| 2125 | integrase | |||
| 2125 | integrase | |||
| 2130 | RM | Lfe3872ORF6755P (97% identity) | Lfe3872ORF2130P | |
| 2135 | cytoplasmic protein | |||
| 9265 | terminase | |||
| 9270 | M | M.Lfe179ORF8525P (100% identity) | M.Lfe3872ORF5415P | |
| 9275 | virulence-related protein CDS | |||