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Putative Helicobacter pylori BM012S RM systems
Ref: Linz,B. et al. PLoS ONE (2013) In press
REBASE ref # 16715
Complete sequence: 1,660,469 bp
GenBank #: CP006889
REBASE acronym: Hpy12S
Org_num: 11444
All begin U064_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1097 | Outer membrane protein HofF | |||
1098 | S | S.Hpy12BORF5785P (100% identity) | S.Hpy12SORF1098P | |
1099 | Lead, cadmium, zinc and mercury transporting | |||
1153 | Hydroxyethylthiazole kinase | |||
??? | R | Hpy12AORF1155P (100% identity) | Hpy12SORF1159P | |
1157 | OrfB in transposon IS607 | |||
1158 | OrfA in transposon IS607 | |||
1159 | M | M.Hpy12AORF1155P (100% identity) | M.Hpy12SORF1159P | |
1160 | Membrane-associated phospholipid phosphatase | |||
1211 | 646 aa hypothetical protein | |||
1212 | R | Hpy12AORF1212AP (100% identity) | Hpy12SORF1216AP | |
1213 | OrfB in transposon IS607 | |||
1214 | OrfA in transposon IS607 | |||
1215 | R | R2.Hpy12BORF6370P (100% identity) | Hpy12SORF1216BP | |
1216 | M | M.Hpy12BORF6370P (100% identity) | M.Hpy12SORF1216P | |
1217 | S | S.Hpy12AORF1212P (100% identity) | S.Hpy12SORF1216P | |
1219 | Polyphosphate kinase | |||
1555 | 43 aa hypothetical protein | |||
1556 | S | S1.Hpy12AORF1554P (100% identity) | S.Hpy12SORF1558P | |
1557 | 171 aa hypothetical protein | |||
1558 | M | M.Hpy12BORF8155P (100% identity) | M.Hpy12SORF1558P | |
1559 | metal-dependent hydrolase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
49 | Agmatine deiminase | |||
50 | M | M1.Hpy12BORF280P (100% identity) | CCTC | M1.Hpy12SORF50P |
51 | M | M2.Hpy12BORF280P (100% identity) | CCTC | M2.Hpy12SORF50P |
52 | R | Hpy12AORF50P (100% identity) | CCTC | Hpy12SORF50P |
54 | 47 aa hypothetical protein | |||
56 | 258 aa hypothetical protein | |||
??? | R | Hpy12BORF320P (100% identity) | GANTC | Hpy12SORF59P |
59 | M | M.Hpy12AORF59P (100% identity) | GANTC | M.Hpy12SORF59P |
60 | adenine specific DNA methyltransferase | |||
59 | Modification methylase | |||
??? | RM | Type IIG R-M system | Hpy12SORF60P | |
63 | Decarboxylating quinolinate | |||
103 | lipopolysaccharide 1,2-glucosyltransferase | |||
??? | M | M.Hpy12BORF560P (100% identity) | GAATTC | M.Hpy12SORF104P |
105 | Adenine-specific methyltransferase | |||
104 | Modification methylase EcoRI | |||
105 | M | Adenine-specific methyltransferase | CCTC | M.Hpy12SORF105P |
106 | Agmatine deiminase | |||
106 | Agmatine deiminase | |||
107 | M | M.Hpy12BORF580P (100% identity) | M.Hpy12SORF107P | |
109 | 114 aa hypothetical protein | |||
136 | Serine acetyltransferase | |||
??? | R | Hpy12BORF730P (100% identity) | CATG | Hpy12SORF139P |
139 | M | M.Hpy12BORF730P (100% identity) | CATG | M.Hpy12SORF139P |
140 | Haloacid dehalogenase | |||
254 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
??? | R | Hpy12BORFBP (100% identity) | GAATTC | Hpy12SORF255P |
259 | Carboxyl-terminal protease | |||
368 | Prephenate and/or arogenate dehydrogenase | |||
??? | M | M.Hpy12BORFAP (100% identity) | CCTC | M.Hpy12SORF369P |
??? | type II DNA modification enzyme | |||
??? | DNA methylase N-4/N-6 domain-containing protein | |||
??? | M | type II DNA modification enzyme | GTSAC | M.Hpy12SORF371P |
373 | OrfB in transposon IS607 | |||
434 | Malonyl CoA-acyl carrier protein transacylase | |||
436 | R | Hpy12BORF2325P (90% identity) | GATC | Hpy12SORF437P |
437 | M | M.Hpy12BORF2325P (100% identity) | GATC | M.Hpy12SORF437P |
438 | 300 aa hypothetical protein | |||
518 | ATPase AAA | |||
520 | R | Hpy12BORF2760P (100% identity) | Hpy12SORF520P | |
521 | Pseudaminic acid synthase | |||
602 | Exodeoxyribonuclease VII large subunit | |||
603 | R | Hpy12BORF3210P (100% identity) | CCGG | Hpy12SORF604P |
604 | M | M.Hpy12BORF3210P (100% identity) | CCGG | M.Hpy12SORF604P |
605 | ClpB protein, ATP-dependent protease binding | |||
651 | polysaccharide deacetylase | |||
652 | R | Hpy12BORF3460P (100% identity) | CTNAG | Hpy12SORF653P |
653 | M | M.Hpy12BORF3460P (100% identity) | CTNAG | M.Hpy12SORF653P |
654 | 120 aa hypothetical protein | |||
765 | ATP-dependent DNA helicase UvrD/PcrA/Rep | |||
??? | M | M.Hpy12BORF4060P (100% identity) | GTNNAC | M.Hpy12SORF766P |
768 | R | Hpy12AORF764P (100% identity) | GTNNAC | Hpy12SORF766P |
769 | Flagellar hook protein FlgE | |||
812 | DNA gyrase subunit B | |||
813 | M | M.Hpy12BORF4290P (100% identity) | GTAC | M.Hpy12SORF813P |
??? | R | Hpy12AORF810P (100% identity) | GTAC | Hpy12SORF813P |
816 | membrane protein | |||
974 | oxidoreductase ferredoxin-like protein | |||
??? | RM | restriction endonuclease Eco57I | Hpy12SORF975P | |
??? | 438 aa hypothetical protein C695_03465 | |||
??? | restriction endonuclease Eco57I | |||
??? | RM | 438 aa hypothetical protein C695_03465 | Hpy12SORF978P | |
980 | Outer membrane protein HorF | |||
1192 | Catalase | |||
1193 | M | M.Hpy12AORF1189P (100% identity) | ACGT | M.Hpy12SORF1193P |
1194 | 207 aa hypothetical protein | |||
1193 | DNA-cytosine methyltransferase | |||
1194 | R | Hpy12BORF6260P (100% identity) | ACNGT | Hpy12SORF1195P |
1195 | M | M.Hpy12BORF6260P (100% identity) | ACNGT | M.Hpy12SORF1195P |
1196 | GTP-binding protein TypA/BipA | |||
1197 | adenine specific DNA methyltransferase | |||
1198 | M | M.Hpy12AORF1194P (100% identity) | ATTAAT | M.Hpy12SORF1198P |
1199 | Outer membrane protein HopJ | |||
1403 | 177 aa hypothetical protein | |||
1404 | M | M.Hpy12BORF7335P (100% identity) | TCNNGA | M.Hpy12SORF1404P |
??? | R | Hpy12BORF7335P (100% identity) | TCNNGA | Hpy12SORF1404P |
1407 | 197 aa hypothetical protein | |||
1441 | 144 aa hypothetical protein | |||
1442 | M | M.Hpy12BORF7540P (100% identity) | GCGC | M.Hpy12SORF1442P |
1443 | FlgM protein | |||
1496 | DNA polymerase I | |||
1497 | S | S.Hpy12BORF7835P (100% identity) | S.Hpy12SORF1498P | |
1498 | RM | Hpy12BORF7835P (100% identity) | Hpy12SORF1498P | |
1499 | 185 aa hypothetical protein | |||
1524 | Permease YjgP/YjgQ | |||
1525 | R | Hpy12BORF7970P (100% identity) | CCATC | Hpy12SORF1525P |
1526 | Outer membrane protein/porin HopK | |||
1539 | Transcription termination protein NusA | |||
1540 | RM | Hpy12BORF8065P (100% identity) | Hpy12SORF1540P | |
1541 | Type III restriction-modification system | |||
1576 | 67 aa hypothetical protein | |||
1577 | M | M.Hpy12BORF8250P (100% identity) | TGCA | M.Hpy12SORF1577P |
1578 | R | Hpy12BORF8250P (100% identity) | TGCA | Hpy12SORF1577P |
1579 | Translation elongation factor Ts | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
73 | Two-component system response regulator | |||
74 | M | M.Hpy12BORF390P (100% identity) | M.Hpy12SORF74P | |
75 | R | Hpy12AORF74P (100% identity) | Hpy12SORF74P | |
77 | Rod shape-determining protein MreC | |||
86 | endonuclease G | |||
87 | M | M.Hpy12AORF87P (100% identity) | M.Hpy12SORF87P | |
88 | R | Hpy12AORF87P (100% identity) | Hpy12SORF87P | |
89 | Biotin synthase | |||
901 | 2-oxoglutarate oxidoreductase, gamma subunit | |||
902 | R | Hpy12AORF899P (100% identity) | GCAG | Hpy12SORF903P |
903 | M | M.Hpy12AORF899P (100% identity) | GCAG | M.Hpy12SORF903P |
904 | 54 aa hypothetical protein | |||
1540 | type IIS restriction/modification | |||
1541 | R | Hpy12BORF8080P (100% identity) | Hpy12SORF1542P | |
??? | M | M.Hpy030ORF7320P (96% identity) | M.Hpy12SORF1542P | |
1544 | ATP-dependent DNA helicase RecG | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
517 | DNA-cytosine methyltransferase | |||
518 | R | Hpy12BMcrBP (100% identity) | Hpy12SMcrBP | |
520 | 403 aa hypothetical protein | |||
823 | Glutamine synthetase | |||
824 | R | Hpy12AGmrSDP (100% identity) | Hpy12SGmrSDP | |
825 | LSU ribosomal protein L9p |