Helicobacter pylori BM012A |
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Putative Helicobacter pylori BM012A RM systems
Ref: Linz,B. et al. PLoS ONE (2013) In press
REBASE ref # 16715
Complete sequence: 1,660,425 bp
GenBank #: CP006888
REBASE acronym: Hpy12A
Org_num: 11443
All begin U063_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1093 | Outer membrane protein HofF | |||
| 1094 | S | S.Hpy12SORF1098P (100% identity) | S.Hpy12AORF1094P | |
| 1095 | Lead, cadmium, zinc and mercury transporting | |||
| 1149 | Hydroxyethylthiazole kinase | |||
| ??? | R | Hpy12SORF1159P (100% identity) | Hpy12AORF1155P | |
| 1153 | OrfB in transposon IS607 | |||
| 1154 | OrfA in transposon IS607 | |||
| 1155 | M | M.Hpy12SORF1159P (100% identity) | M.Hpy12AORF1155P | |
| 1156 | Membrane-associated phospholipid phosphatase | |||
| 1207 | 646 aa hypothetical protein | |||
| 1208 | R | Hpy12SORF1216AP (100% identity) | Hpy12AORF1212AP | |
| 1209 | OrfB in transposon IS607 | |||
| 1210 | OrfA in transposon IS607 | |||
| 1211 | R | Hpy12SORF1216BP (100% identity) | Hpy12AORF1212BP | |
| 1212 | M | M.Hpy12SORF1216P (100% identity) | M.Hpy12AORF1212P | |
| 1213 | S | S.Hpy12SORF1216P (100% identity) | S.Hpy12AORF1212P | |
| 1215 | Polyphosphate kinase | |||
| 1551 | 43 aa hypothetical protein | |||
| 1552 | S | S.Hpy12SORF1558P (100% identity) | S1.Hpy12AORF1554P | |
| 1553 | 171 aa hypothetical protein | |||
| 1554 | M | M.Hpy12SORF1558P (100% identity) | M.Hpy12AORF1554P | |
| 1555 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 49 | Agmatine deiminase | |||
| 50 | M | M1.Hpy12SORF50P (100% identity) | CCTC | M1.Hpy12AORF50P |
| 51 | M | M2.Hpy12SORF50P (100% identity) | CCTC | M2.Hpy12AORF50P |
| 52 | R | Hpy12SORF50P (100% identity) | CCTC | Hpy12AORF50P |
| 54 | 47 aa hypothetical protein | |||
| 56 | 258 aa hypothetical protein | |||
| ??? | R | Hpy12SORF59P (100% identity) | GANTC | Hpy12AORF59P |
| 59 | M | M.Hpy12SORF59P (100% identity) | GANTC | M.Hpy12AORF59P |
| 60 | Adenine specific DNA methyltransferase | |||
| 59 | Modification methylase | |||
| ??? | RM | Type IIG R-M system | Hpy12AORF60P | |
| 63 | Decarboxylating quinolinate | |||
| 103 | lipopolysaccharide 1,2-glucosyltransferase | |||
| ??? | M | M.Hpy12SORF104P (100% identity) | GAATTC | M.Hpy12AORF104P |
| 105 | Adenine-specific methyltransferase | |||
| 104 | Modification methylase EcoRI | |||
| 105 | M | Adenine-specific methyltransferase | CCTC | M.Hpy12AORF105P |
| 106 | Agmatine deiminase | |||
| 106 | Agmatine deiminase | |||
| 107 | M | M.Hpy12SORF107P (100% identity) | M.Hpy12AORF107P | |
| 109 | 114 aa hypothetical protein | |||
| 136 | Serine acetyltransferase | |||
| ??? | R | Hpy12SORF139P (100% identity) | CATG | Hpy12AORF139P |
| 139 | M | M.Hpy12SORF139P (100% identity) | CATG | M.Hpy12AORF139P |
| 140 | Haloacid dehalogenase | |||
| 253 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | Hpy12SORF255P (100% identity) | GAATTC | Hpy12AORF254P |
| 258 | Carboxyl-terminal protease | |||
| 367 | Prephenate and/or arogenate dehydrogenase | |||
| ??? | M | M.Hpy12SORF369P (100% identity) | CCTC | M.Hpy12AORF368P |
| ??? | type II DNA modification enzyme | |||
| ??? | DNA methylase N-4/N-6 domain-containing protein | |||
| ??? | M | type II DNA modification enzyme | GTSAC | M.Hpy12AORF370P |
| 372 | OrfB in transposon IS607 | |||
| 433 | Malonyl CoA-acyl carrier protein transacylase | |||
| 435 | R | Hpy12SORF437P (100% identity) | GATC | Hpy12AORF436P |
| 436 | M | M.Hpy12SORF437P (100% identity) | GATC | M.Hpy12AORF436P |
| 437 | 300 aa hypothetical protein | |||
| 517 | ATPase AAA | |||
| 519 | R | Hpy12SORF520P (100% identity) | Hpy12AORF516P | |
| 520 | Pseudaminic acid synthase | |||
| 601 | Exodeoxyribonuclease VII large subunit | |||
| 602 | R | Hpy12SORF604P (100% identity) | CCGG | Hpy12AORF603P |
| 603 | M | M.Hpy12SORF604P (100% identity) | CCGG | M.Hpy12AORF603P |
| 604 | ClpB protein, ATP-dependent protease binding | |||
| 650 | polysaccharide deacetylase | |||
| 651 | R | Hpy12SORF653P (100% identity) | CTNAG | Hpy12AORF652P |
| 652 | M | M.Hpy12SORF653P (100% identity) | CTNAG | M.Hpy12AORF652P |
| 653 | 120 aa hypothetical protein | |||
| 763 | ATP-dependent DNA helicase UvrD/PcrA/Rep | |||
| ??? | M | M.Hpy12SORF766P (100% identity) | GTNNAC | M.Hpy12AORF764P |
| 766 | R | Hpy12SORF766P (100% identity) | GTNNAC | Hpy12AORF764P |
| 767 | Flagellar hook protein FlgE | |||
| 809 | DNA gyrase subunit B | |||
| 810 | M | M.Hpy12SORF813P (100% identity) | GTAC | M.Hpy12AORF810P |
| ??? | R | Hpy12SORF813P (100% identity) | GTAC | Hpy12AORF810P |
| 813 | membrane protein | |||
| 970 | oxidoreductase ferredoxin-like protein | |||
| ??? | RM | restriction endonuclease Eco57I | Hpy12AORF971P | |
| ??? | 438 aa hypothetical protein C695_03465 | |||
| ??? | restriction endonuclease Eco57I | |||
| ??? | RM | 438 aa hypothetical protein C695_03465 | Hpy12AORF974P | |
| 976 | Outer membrane protein HorF | |||
| 1188 | Catalase | |||
| 1189 | M | M.Hpy12SORF1193P (100% identity) | ACGT | M.Hpy12AORF1189P |
| 1190 | 207 aa hypothetical protein | |||
| 1189 | DNA-cytosine methyltransferase | |||
| 1190 | R | Hpy12SORF1195P (100% identity) | ACNGT | Hpy12AORF1191P |
| 1191 | M | M.Hpy12SORF1195P (100% identity) | ACNGT | M.Hpy12AORF1191P |
| 1192 | GTP-binding protein TypA/BipA | |||
| 1193 | adenine specific DNA methyltransferase | |||
| 1194 | M | M.Hpy12SORF1198P (100% identity) | ATTAAT | M.Hpy12AORF1194P |
| 1195 | Outer membrane protein HopJ | |||
| 1398 | 177 aa hypothetical protein | |||
| 1399 | M | M.Hpy12SORF1404P (100% identity) | TCNNGA | M.Hpy12AORF1399P |
| ??? | R | Hpy12SORF1404P (100% identity) | TCNNGA | Hpy12AORF1399P |
| 1402 | 197 aa hypothetical protein | |||
| 1436 | 144 aa hypothetical protein | |||
| 1437 | M | M.Hpy12SORF1442P (98% identity) | GCGC | M.Hpy12AORF1437P |
| 1438 | FlgM protein | |||
| 1492 | DNA polymerase I | |||
| 1493 | S | S.Hpy12SORF1498P (100% identity) | S.Hpy12AORF1494P | |
| 1494 | RM | Hpy12SORF1498P (100% identity) | Hpy12AORF1494P | |
| 1495 | 185 aa hypothetical protein | |||
| 1520 | Permease YjgP/YjgQ | |||
| 1521 | R | Hpy12SORF1525P (100% identity) | CCATC | Hpy12AORF1521P |
| 1522 | Outer membrane protein/porin HopK | |||
| 1535 | Transcription termination protein NusA | |||
| 1536 | RM | Hpy12SORF1540P (100% identity) | Hpy12AORF1536P | |
| 1537 | Type III restriction-modification system | |||
| 1572 | 67 aa hypothetical protein | |||
| 1573 | M | M.Hpy12SORF1577P (100% identity) | TGCA | M.Hpy12AORF1573P |
| 1574 | R | Hpy12SORF1577P (100% identity) | TGCA | Hpy12AORF1573P |
| 1575 | Translation elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 73 | Two-component system response regulator | |||
| 74 | M | M.Hpy12SORF74P (100% identity) | M.Hpy12AORF74P | |
| 75 | R | Hpy12SORF74P (100% identity) | Hpy12AORF74P | |
| 77 | Rod shape-determining protein MreC | |||
| 86 | endonuclease G | |||
| 87 | M | M.Hpy12SORF87P (100% identity) | M.Hpy12AORF87P | |
| 88 | R | Hpy12SORF87P (100% identity) | Hpy12AORF87P | |
| 89 | Biotin synthase | |||
| 897 | 2-oxoglutarate oxidoreductase, gamma subunit | |||
| 898 | R | Hpy12SORF903P (100% identity) | GCAG | Hpy12AORF899P |
| 899 | M | M.Hpy12SORF903P (100% identity) | GCAG | M.Hpy12AORF899P |
| 900 | 54 aa hypothetical protein | |||
| 1536 | type IIS restriction/modification | |||
| 1537 | R | Hpy12SORF1542P (100% identity) | Hpy12AORF1538P | |
| ??? | M | M.Hpy12BORF8080P (100% identity) | M.Hpy12AORF1538P | |
| 1540 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 516 | DNA-cytosine methyltransferase | |||
| 517 | R | Hpy12SMcrBP (100% identity) | Hpy12AMcrBP | |
| 519 | 403 aa hypothetical protein | |||
| 820 | Glutamine synthetase | |||
| 821 | R | Hpy12SGmrSDP (100% identity) | Hpy12AGmrSDP | |
| 822 | LSU ribosomal protein L9p | |||