|
Putative Helicobacter pylori UM085 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,645,062 bp
GenBank #: AUSP00000000 (NZ_AUSP00000000)
REBASE acronym: HpyUM085
Org_num: 11539
All begin N204_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
4870 | S | S.HpyMA03ORF4145P (61% identity) | S.HpyUM085ORF4870P | |
4875 | R | HpyMA03ORF4145P (100% identity) | HpyUM085ORF4870P | |
4880 | hydroxyethylthiazole kinase | |||
3760 | metal-dependent hydrolase | |||
??? | R | HpyMA03XP (100% identity) | HpyUM085ORF3775P | |
3775 | M | M.HpyMA03X (100% identity) | M.HpyUM085ORF3775P | |
3780 | S | S.HpyMA03X (99% identity) | S.HpyUM085ORF3775P | |
3785 | 43 aa hypothetical protein | |||
65 | 631 aa hypothetical protein | |||
??? | R | HpyMA03ORF2250P (99% identity) | HpyUM085ORF90P | |
90 | M | M.HpyMA03ORF2250P (100% identity) | M.HpyUM085ORF90P | |
95 | S | S.HpyMA03ORF2250P (100% identity) | S.HpyUM085ORF90P | |
105 | polyphosphate kinase | |||
3125 | 30 aa hypothetical protein | |||
3130 | S | S.HpyMA03XIV (60% identity) | S.HpyUM085ORF3130P | |
6895 | membrane protein | |||
6905 | M | M.HpyMA03ORF4145P (100% identity) | M.HpyUM085ORF6905P | |
6900 | S | S.HpyMA03ORF4145P (97% identity) | S.HpyUM085ORF6905P | |
5190 | cadmium transporter | |||
5195 | S | S.HpyMA03XIV (96% identity) | S.HpyUM085ORF5195P | |
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
7515 | membrane protein | |||
7520 | M | M.HpyMA03III (100% identity) | ATTAAT | M.HpyUM085ORF7520P |
7525 | glycosyltransferase 9 family protein | |||
8175 | 144 aa hypothetical protein | |||
8180 | M | M.HpyMA03XV (100% identity) | GCGC | M.HpyUM085ORF8180P |
8185 | flgM protein | |||
7530 | GTP-binding protein | |||
7535 | M | M.HpyMA03ORF2345P (100% identity) | ACNGT | M.HpyUM085ORF7535P |
7540 | R | HpyMA03ORF2345P (100% identity) | ACNGT | HpyUM085ORF7535P |
7545 | DNA methyltransferase | |||
7655 | DNA gyrase subunit B | |||
7660 | M | M.HpyMKM5ORF881P (98% identity) | GTAC | M.HpyUM085ORF7660P |
7665 | R | HpyMA03XIIP (100% identity) | GTAC | HpyUM085ORF7660P |
7670 | membrane protein | |||
7540 | type II restriction endonuclease | |||
7545 | M | M.HpyTW01ORF2320P (100% identity) | ACGT | M.HpyUM085ORF7545P |
7550 | R | HpyTW01ORF2320P (100% identity) | ACGT | HpyUM085ORF7545P |
7555 | 50 aa hypothetical protein | |||
7985 | biotin carboxylase | |||
7990 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.HpyUM085ORF7990P |
7995 | R | HpyMA03VIIIP (100% identity) | TCNNGA | HpyUM085ORF7990P |
8000 | Laminin subunit alpha-2 precursor | |||
5595 | nicotinate-nucleotide pyrophosphorylase | |||
??? | RM | HpyMA03ORF250P (97% identity) | HpyUM085ORF5600P | |
5605 | DNA methylase N-4 | |||
7855 | flagellar hook protein FlgE | |||
7860 | R | HpyMA03XIIIP (99% identity) | GTNNAC | HpyUM085ORF7865P |
??? | M | M.HpyMA03XIII (100% identity) | GTNNAC | M.HpyUM085ORF7865P |
7870 | ATP-dependent DNA helicase | |||
??? | hypothetical protein | |||
5605 | M | M.Hpyfe89ORF7150P (100% identity) | GANTC | M.HpyUM085ORF5605P |
5610 | R | HpyMA03IVP (100% identity) | GANTC | HpyUM085ORF5605P |
5615 | peptidase S41 | |||
1865 | glycerol-3-phosphate dehydrogenase subunit C | |||
??? | RM | HpyMA03ORF3275P (100% identity) | HpyUM085ORF1870P | |
1880 | membrane protein | |||
5910 | HrgA protein | |||
5915 | M | M.HpyMA03XI (100% identity) | GATC | M.HpyUM085ORF5915P |
5920 | alpha-1,2-fucosyltransferase | |||
4090 | amidophosphoribosyltransferase | |||
??? | RM | Hpy274ORF1659P (97% identity) | HpyUM085ORF4095P | |
4105 | S | S.HpyMA03ORF6950P (49% identity) | S.HpyUM085ORF4095P | |
4110 | DNA polymerase I | |||
5655 | 31 aa hypothetical protein | |||
5660 | M | M1.HpyMA03VII (100% identity) | CCTC | M1.HpyUM085ORF5660P |
5665 | M | M2.HpyMA03VIIP (100% identity) | CCTC | M2.HpyUM085ORF5660P |
5670 | R | HpyMA03VIIP (100% identity) | CCTC | HpyUM085ORF5660P |
5675 | hin4II restriction endonuclease | |||
5670 | restriction endonuclease | |||
5675 | R | HpyMA03IXP (100% identity) | CCTTC | HpyUM085ORF5680P |
5680 | M | M.HpyMA03IX (100% identity) | CCTTC | M.HpyUM085ORF5680P |
5685 | sodium:proline symporter | |||
3620 | 366 aa hypothetical protein | |||
3625 | M | M.HpyMA03ORF7355P (100% identity) | M.HpyUM085ORF3625P | |
3630 | Type II restriction enzyme | |||
3860 | 717 aa hypothetical protein | |||
3865 | RM | HpyMA03ORF7160P (100% identity) | HpyUM085ORF3865P | |
3870 | 30 aa hypothetical protein | |||
3625 | DNA methyltransferase | |||
3630 | R | HpyMA03VP (100% identity) | TGCA | HpyUM085ORF3635P |
3635 | M | M.HpySG04XIII (100% identity) | TGCA | M.HpyUM085ORF3635P |
3640 | 67 aa hypothetical protein | |||
6215 | serine acetyltransferase | |||
??? | R | HpyMA03IP (100% identity) | CATG | HpyUM085ORF6220P |
6220 | M | M.HpyMA03I (100% identity) | CATG | M.HpyUM085ORF6220P |
6225 | hydrolase | |||
1965 | polysaccharide biosynthesis protein | |||
1970 | M | M.HpySG07ORF3370P (97% identity) | GGNNCC | M.HpyUM085ORF1970P |
1975 | R | Hpyfe85ORF3790P (100% identity) | GGNNCC | HpyUM085ORF1970P |
1980 | 3-5 exonuclease | |||
1465 | N-acetylneuraminate synthase | |||
1470 | R | R2.HpyMA03ORF935P (100% identity) | HpyUM085ORF1480P | |
??? | ATPase AAA | |||
??? | ATPase AAA | |||
1475 | 256 aa hypothetical protein | |||
1480 | M | M1.HpyMA03ORF935P (100% identity) | M.HpyUM085ORF1480P | |
1490 | elongation factor P | |||
530 | 156 aa hypothetical protein | |||
535 | M | M.HpyMA03ORF1815P (100% identity) | GCNGC | M.HpyUM085ORF535P |
540 | elongation factor 4 | |||
750 | 125 aa hypothetical protein | |||
755 | M | M.HpyUM023ORF3530P (100% identity) | CTNAG | M.HpyUM085ORF755P |
760 | R | Hpyfe110ORF5990P (100% identity) | CTNAG | HpyUM085ORF755P |
765 | 293 aa hypothetical protein | |||
995 | molecular chaperone ClpB | |||
1000 | M | M.Hpyfe93ORF5875P (100% identity) | CCGG | M.HpyUM085ORF1000P |
??? | R | HpyMA03IIP (100% identity) | CCGG | HpyUM085ORF1000P |
1015 | exodeoxyribonuclease VII large subunit | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
4325 | biotin synthase | |||
??? | R | HpyMA03ORF6600P (95% identity) | HpyUM085ORF4335P | |
4335 | M | M.HpyMA03ORF6600P (100% identity) | M.HpyUM085ORF4335P | |
4340 | type II citrate synthase | |||
3845 | ATP-dependent DNA helicase RecG | |||
3850 | M | M.HpyMA03XVI (100% identity) | M.HpyUM085ORF3850P | |
3855 | R | HpyMA03XVIP (100% identity) | HpyUM085ORF3850P | |
3860 | 717 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
7700 | glutamine synthetase | |||
7705 | R | HpyMA03GmrSDP (100% identity) | HpyUM085GmrSDP | |
7710 | 50S ribosomal protein L9 | |||
1470 | llaJI restriction endonuclease | |||
??? | R | ATPase AAA | HpyUM085McrBP | |
??? | ATPase AAA | |||
??? | ATPase AAA | |||
??? | R | R1.HpyMA03ORF1005P (49% identity) | HpyUM085McrB2P | |
1475 | 256 aa hypothetical protein |