Helicobacter pylori UM111 |
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Putative Helicobacter pylori UM111 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,663,127 bp
GenBank #: AUSR00000000 (NZ_AUSR00000000)
REBASE acronym: HpyUM111
Org_num: 11541
All begin N206_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5435 | S | S.HpyUM111ORF8230P (61% identity) | S.HpyUM111ORF5435P | |
| 5445 | membrane protein | |||
| 7520 | S | S.HpyUM111ORF8230P (61% identity) | S.HpyUM111ORF7520P | |
| 7525 | R | HpyP30ORFTP (96% identity) | HpyUM111ORF7520P | |
| 7530 | hydroxyethylthiazole kinase | |||
| 2255 | metal-dependent hydrolase | |||
| 2285 | R | HpyOK314ORFKP (61% identity) | HpyUM111ORF2255P | |
| 2260 | 259 aa hypothetical protein | |||
| 4130 | 631 aa hypothetical protein | |||
| ??? | R | HpyMKM1ORF464P (94% identity) | HpyUM111ORF4150P | |
| 4150 | M | M.Hpy23ORF787P (96% identity) | M.HpyUM111ORF4150P | |
| 4155 | S | S.HpyV003ORF3705P (80% identity) | S.HpyUM111ORF4150P | |
| 4165 | polyphosphate kinase | |||
| 8225 | cadmium transporter | |||
| 8230 | S | S.HpyMA08ORF2780P (95% identity) | S.HpyUM111ORF8230P | |
| 6765 | membrane protein | |||
| ??? | M | M.HpySG02ORF2100P (91% identity) | M.HpyUM111ORF6770P | |
| 6780 | S | S.HpySG38ORF2940P (97% identity) | S.HpyUM111ORF6770P | |
| 3450 | 47 aa hypothetical protein | |||
| 3455 | S | S.HpyPF16ORF7200P (96% identity) | S.HpyUM111ORF3460P | |
| 3460 | M | M.Hpy55ORF1503P (97% identity) | M.HpyUM111ORF3460P | |
| 3465 | R | Hpyfe85ORF7515P (34% identity) | HpyUM111ORF3460P | |
| 3470 | integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8020 | 283 aa hypothetical protein | |||
| 8025 | M | M.HpyU425XI (99% identity) | TCNNGA | M.HpyUM111ORF8025P |
| 8030 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | HpyUM111ORF8025P |
| 8035 | Laminin subunit alpha-2 precursor | |||
| 8235 | membrane protein | |||
| 8240 | M | M.HpyK029II (98% identity) | ATTAAT | M.HpyUM111ORF8240P |
| 8245 | glycosyltransferase 9 family protein | |||
| 8535 | 32 aa hypothetical protein | |||
| 8540 | M | M.HpyUM077ORF5825P (100% identity) | CGWCG | M.HpyUM111ORF8540P |
| 8545 | R | Hpyfe73ORF4490P (100% identity) | CGWCG | HpyUM111ORF8540P |
| 8550 | osmoprotection protein | |||
| 8250 | GTP-binding protein | |||
| 8255 | M | M.Hpy63ORF486P (99% identity) | ACNGT | M.HpyUM111ORF8255P |
| 8260 | R | Hpyfe88ORF4775P (100% identity) | ACNGT | HpyUM111ORF8255P |
| 8265 | DNA methyltransferase | |||
| 1495 | sodium:proline symporter | |||
| 1500 | M | M1.Hpyfe12ORF7025P (78% identity) | CCTC | M2.HpyUM111ORF1500P |
| 1505 | M | M2.Hpyfe3ORF6780P (96% identity) | CCTC | M1.HpyUM111ORF1500P |
| 1510 | 52 aa hypothetical protein | |||
| 8260 | type II restriction endonuclease | |||
| 8265 | M | M.HpySG38ORF4715P (99% identity) | ACGT | M.HpyUM111ORF8265P |
| 8270 | R | HpyJA101ORF2295P (98% identity) | ACGT | HpyUM111ORF8265P |
| 8275 | catalase | |||
| 1330 | alpha-1,2-fucosyltransferase | |||
| 1335 | M | M.Hpy1681ORFTP (98% identity) | GATC | M.HpyUM111ORF1335P |
| 1340 | R | HpySG06VIIP (98% identity) | GATC | HpyUM111ORF1335P |
| 1350 | malonyl CoA-ACP transacylase | |||
| 7075 | flagellar hook protein FlgE | |||
| ??? | R | HpyTW16XIP (99% identity) | GTNNAC | HpyUM111ORF7085P |
| ??? | M | M.HpyQ59ORFNP (98% identity) | GTNNAC | M.HpyUM111ORF7085P |
| 7090 | ATP-dependent DNA helicase | |||
| 1555 | peptidase S41 | |||
| ??? | RM | HpyJF13ORF47P (85% identity) | HpyUM111ORF1560P | |
| 1570 | nicotinate-nucleotide pyrophosphorylase | |||
| 155 | 128 aa hypothetical protein | |||
| 160 | M | M.Hpyfe124ORF5400P (100% identity) | CTNAG | M.HpyUM111ORF160P |
| 165 | R | Hpyfe110ORF5990P (100% identity) | CTNAG | HpyUM111ORF160P |
| 170 | 293 aa hypothetical protein | |||
| 6895 | flgM protein | |||
| 6900 | M | M.HpyT027XV (98% identity) | GCGC | M.HpyUM111ORF6900P |
| 6905 | 144 aa hypothetical protein | |||
| 1620 | chemotaxis protein CheY | |||
| 1625 | R | HpySG14VIP (98% identity) | GAAGA | HpyUM111ORF1630P |
| 1630 | M | M2.HpyT027VIII (99% identity) | GAAGA | M1.HpyUM111ORF1630P |
| 1635 | M | M2.Hpyfe55ORF6945P (99% identity) | GAAGA | M2.HpyUM111ORF1630P |
| 1645 | type III restriction endonuclease subunit M | |||
| 3130 | DNA polymerase I | |||
| 3525 | S | S.HpyNCI18ORFCP (94% identity) | S.HpyUM111ORF3135P | |
| ??? | RM | HpyID2ORF6760P (97% identity) | HpyUM111ORF3135P | |
| 3145 | amidophosphoribosyltransferase | |||
| 6455 | membrane protein | |||
| ??? | RM | HpyKH33ORFFP (81% identity) | HpyUM111ORF6460P | |
| 6465 | 43 aa hypothetical protein | |||
| 3705 | serine acetyltransferase | |||
| 3710 | R | HpySG15IP (99% identity) | CATG | HpyUM111ORF3715P |
| 3715 | M | M.Hpy66XI (99% identity) | CATG | M.HpyUM111ORF3715P |
| 3720 | hydrolase | |||
| 3270 | permease | |||
| 3275 | M | M1.HpyTW20VI (100% identity) | GATGG | M1.HpyUM111ORF3275P |
| 3280 | M | M2.HpyTW20VI (99% identity) | CCATC | M2.HpyUM111ORF3275P |
| 3285 | R | HpySG02IIP (99% identity) | CCATC | HpyUM111ORF3275P |
| 3290 | membrane protein | |||
| 400 | molecular chaperone ClpB | |||
| 405 | M | M.HpyTW21III (99% identity) | CCGG | M.HpyUM111ORF405P |
| 410 | R | HpyMA20IIP (96% identity) | CCGG | HpyUM111ORF405P |
| 415 | 204 aa hypothetical protein | |||
| 415 | 204 aa hypothetical protein | |||
| 420 | M | M.HpyUM032XVII (98% identity) | TCGA | M.HpyUM111ORF420P |
| 425 | exodeoxyribonuclease VII large subunit | |||
| 3360 | 29 aa hypothetical protein | |||
| ??? | RM | Hpyfe61ORF55P (91% identity) | HpyUM111ORFAP | |
| 3365 | 334 aa hypothetical protein | |||
| 4585 | 156 aa hypothetical protein | |||
| 4590 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.HpyUM111ORF4590P |
| 4595 | elongation factor 4 | |||
| 2140 | 382 aa hypothetical protein | |||
| 2145 | M | M.HpyF216ORFCP (98% identity) | M.HpyUM111ORF2145P | |
| 2150 | Type II restriction enzyme | |||
| 2145 | DNA methyltransferase | |||
| 2150 | R | HpyF233ORFCP (98% identity) | TGCA | HpyUM111ORF2150P |
| 2155 | M | M.HpySG12XI (98% identity) | TGCA | M.HpyUM111ORF2150P |
| 2160 | 67 aa hypothetical protein | |||
| 865 | N-acetylneuraminate synthase | |||
| ??? | R | R2.HpySG05ORF940P (97% identity) | HpyUM111ORF890P | |
| 880 | ATPase AAA | |||
| 885 | 256 aa hypothetical protein | |||
| 890 | M | M1.HpyK28ORF990P (98% identity) | M.HpyUM111ORF890P | |
| 895 | elongation factor P | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1635 | 287 aa hypothetical protein | |||
| ??? | M | M.HpyC208ORF205P (97% identity) | TCAG | M.HpyUM111ORF1645P |
| 1655 | R | Hpy66ORF4780P (96% identity) | TCAG | HpyUM111ORF1645P |
| 1660 | rod shape-determining protein MreC | |||
| 3375 | 115 aa hypothetical protein | |||
| 3380 | R | HpyTW02ORF6990P (97% identity) | HpyUM111ORF3385P | |
| 3385 | M | M.Hpyfe103ORF40P (95% identity) | M.HpyUM111ORF3385P | |
| 3390 | ATP-dependent DNA helicase RecG | |||
| 2905 | multidrug resistance protein | |||
| ??? | M | M.Hpy55ORF1371P (96% identity) | M.HpyUM111ORF2910P | |
| 2915 | R | Hpyfe92ORF650P (89% identity) | HpyUM111ORF2910P | |
| 2920 | type III restriction-modification enzyme domain | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | hypothetical protein | |||
| 880 | R | R1.HpyTW21ORF915P (97% identity) | HpyUM111McrBP | |
| 885 | 256 aa hypothetical protein | |||