Helicobacter pylori UM066 |
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Putative Helicobacter pylori UM066 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,694,163 bp
GenBank #: AUSJ00000000 (NZ_AUSJ00000000)
REBASE acronym: Hpy66
Org_num: 10628
All begin N201_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5425 | 178 aa hypothetical protein | |||
| 5430 | R | HpyJSHR6ORF14880P (39% identity) | Hpy66ORF85P | |
| ??? | M | M.HpyPE111ORF7360P (98% identity) | M.Hpy66ORF85P | |
| 5510 | pseudogene | |||
| 5435 | S | S.Hpyfe19ORF7830P (98% identity) | S.Hpy66ORF85P | |
| 5440 | 30 aa hypothetical protein | |||
| 4675 | 37 aa hypothetical protein | |||
| 4680 | M | M.HpyUM023ORF5765P (97% identity) | M.Hpy66ORF4960P | |
| 4685 | S | S.HpySP15XV (63% identity) | S.Hpy66ORF4960P | |
| 4690 | R | Hpyfe22ORF4765P (96% identity) | Hpy66ORF4960P | |
| 4695 | hydroxyethylthiazole kinase | |||
| 5010 | cadmium transporter | |||
| 5015 | S | S.HpyV005V (97% identity) | CTANNNNNNNTTC | S.Hpy66XVI |
| 5020 | membrane protein | |||
| 1360 | polyphosphate kinase | |||
| 1370 | S | S.Hpyfe68ORF4835P (97% identity) | CAGNNNNNTC | S.Hpy66XV |
| 1375 | M | M.HpyTW03ORF2310P (97% identity) | CAGNNNNNTC | M.Hpy66XV |
| ??? | R | HpyTW22ORF2200P (95% identity) | CAGNNNNNTC | Hpy66XVP |
| 1395 | 631 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5525 | DEAD/DEAH box helicase | |||
| 5530 | RM | HpyJ021ORF7065P (83% identity) | Hpy66ORF165P | |
| 5535 | 30 aa hypothetical protein | |||
| 8480 | 45 aa hypothetical protein | |||
| ??? | R | HpyUM065ORF7975P (99% identity) | ACGT | Hpy66ORF5135P |
| 8495 | M | M.Hpyfe110ORF5235P (99% identity) | ACGT | M.Hpy66ORF5135P |
| 8500 | type II restriction endonuclease | |||
| 8495 | DNA methyltransferase | |||
| 8500 | R | Hpyfe89ORF5085P (98% identity) | ACNGT | Hpy66IIP |
| 8505 | M | M.HpyQ59ORFXP (99% identity) | ACNGT | M.Hpy66II |
| 8510 | GTP-binding protein | |||
| 8515 | glycosyltransferase 9 family protein | |||
| 8520 | M | M.HpyK029II (98% identity) | ATTAAT | M.Hpy66VII |
| 8525 | membrane protein | |||
| ??? | restriction endonuclease | |||
| 2330 | M | M2.Hpy30XIIP (98% identity) | CCTC | M2.Hpy66XIVP |
| 2335 | M | M2.Hpyfe39ORF7035P (99% identity) | CCTC | M1.Hpy66XIV |
| 2340 | 31 aa hypothetical protein | |||
| 7845 | flagellar hook protein FlgE | |||
| 7850 | R | Hpyfe102ORF2870P (98% identity) | GTNNAC | Hpy66XIIIP |
| 7855 | M | M.HpyCA2IX (98% identity) | GTNNAC | M.Hpy66XIII |
| 7860 | ATP-dependent DNA helicase | |||
| 3250 | DNA gyrase subunit B | |||
| ??? | M | M.HpyK053IX (99% identity) | GTAC | M.Hpy66XII |
| 3260 | hypothetical protein | |||
| 8250 | purine nucleoside phosphorylase | |||
| ??? | R | restriction endonuclease | TCNGA | Hpy66VP |
| 8260 | M | M.HpyFD719ORF7810P (97% identity) | TCNGA | M.Hpy66V |
| 8265 | membrane protein | |||
| 6020 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 6025 | RM | HpyG272ORF3895AP (73% identity) | Hpy66ORF4030CP | |
| 6030 | RM | HpySG32ORF3805P (62% identity) | Hpy66ORF4030BP | |
| 6035 | RM | 233 aa hypothetical protein | Hpy66ORF4030AP | |
| 6040 | membrane protein | |||
| 8015 | Laminin subunit alpha-2 precursor | |||
| ??? | R | Hpyfe59ORF2060P (89% identity) | TCNNGA | Hpy66VIP |
| 8030 | M | M.HpyML1ORFZP (100% identity) | TCNNGA | M.Hpy66VI |
| 8035 | biotin carboxylase | |||
| 4850 | 33 aa hypothetical protein | |||
| 4855 | M | M.HpyUM111ORF8540P (100% identity) | CGWCG | M.Hpy66I |
| 4860 | R | Hpyfe73ORF4490P (100% identity) | CGWCG | Hpy66IP |
| 4865 | osmoprotection binding protein | |||
| 7310 | flgM protein | |||
| 7315 | M | M.HpyLIM2ORF5505P (98% identity) | GCGC | M.Hpy66ORF2030P |
| 7320 | 144 aa hypothetical protein | |||
| 2390 | DNA methyltransferase | |||
| 2395 | R | Hpy274ORF66P (98% identity) | GANTC | Hpy66IVP |
| 2400 | M | M.HpyT026VIII (99% identity) | GANTC | M.Hpy66IV |
| 2405 | type II restriction endonuclease | |||
| 5605 | membrane protein | |||
| ??? | R | HpyT026IVP (98% identity) | CCATC | Hpy66XP |
| 5615 | M | M2.HpyMA22III (99% identity) | CCATC | M2.Hpy66X |
| 5620 | M | M1.HpySG08IV (99% identity) | CCATC | M1.Hpy66X |
| 5625 | permease | |||
| 2400 | DNA methylase N-4 | |||
| ??? | RM | Hpy66ORF8545P (99% identity) | Hpy66ORF7505P | |
| 2420 | nicotinate-nucleotide pyrophosphorylase | |||
| 7070 | type II restriction enzyme NlaIII | |||
| 7075 | M | M.HpyUM023ORF4605P (99% identity) | CATG | M.Hpy66XI |
| 7080 | hydrolase | |||
| 2045 | alpha-1,2-fucosyltransferase | |||
| 2050 | M | M.HpyK93ORF6805P (98% identity) | GATC | M.Hpy66III |
| 2055 | type II restriction endonuclease MboI | |||
| 5750 | amidophosphoribosyltransferase | |||
| 5755 | RM | Hpyfe24ORF270P (98% identity) | Hpy66ORF415P | |
| 5760 | S | S.HpyFD719ORF8250P (55% identity) | S.Hpy66ORF415P | |
| 5765 | DNA polymerase I | |||
| ??? | 229 aa hypothetical protein | |||
| 475 | M | M.HpyTW08V (100% identity) | CCGG | M.Hpy66IX |
| 480 | molecular chaperone ClpB | |||
| 2945 | 366 aa hypothetical protein | |||
| 2950 | M | M.HpyT027ORF7715P (100% identity) | M.Hpy66ORF8045P | |
| 2955 | Type II restriction enzyme | |||
| 2950 | DNA methyltransferase | |||
| 2955 | R | HpyPE130XIP (98% identity) | TGCA | Hpy66VIIIP |
| 2960 | M | M.HpysHP34ORF1860P (98% identity) | TGCA | M.Hpy66VIII |
| 2965 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5520 | M | M.HpyTW04ORF7140P (98% identity) | M.Hpy66ORF150P | |
| 5525 | R | Hpyfe81ORF40P (97% identity) | Hpy66ORF150P | |
| 5530 | type II restriction endonuclease | |||
| 4865 | osmoprotection binding protein | |||
| ??? | M | M.HpyJ029ORF200P (96% identity) | M.Hpy66ORF4780P | |
| 4875 | R | HpyUM111ORF1645P (96% identity) | Hpy66ORF4780P | |
| 4880 | 145 aa hypothetical protein | |||
| 4475 | endonuclease | |||
| 4480 | M | M.HpyQ59ORFRP (97% identity) | M.Hpy66ORF795P | |
| ??? | R | HpyOK13ORFDP (93% identity) | Hpy66ORF795P | |
| 4490 | 33 aa hypothetical protein | |||