Helicobacter pylori UM065 |
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Putative Helicobacter pylori UM065 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,586,653 bp
GenBank #: AUSM00000000 (NZ_AUSM00000000)
REBASE acronym: HpyUM065
Org_num: 11537
All begin N200_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5530 | S | S.HpyUM065ORF5185P (97% identity) | S.HpyUM065ORF5530P | |
| 5855 | R | HpyT029ORF2685P (97% identity) | HpyUM065ORF5530P | |
| 5535 | hydroxyethylthiazole kinase | |||
| 2845 | pseudogene | |||
| 2850 | R | Hpyfe70ORF7585P (97% identity) | HpyUM065ORF2855P | |
| 2855 | M | M.HpyPE103ORF7520P (96% identity) | M.HpyUM065ORF2855P | |
| 2860 | S | S.HpyK006ORF7205P (96% identity) | S.HpyUM065ORF2855P | |
| 2865 | 30 aa hypothetical protein | |||
| 60 | 631 aa hypothetical protein | |||
| ??? | R | Hpyfe73ORF4910P (93% identity) | HpyUM065ORF80P | |
| 80 | M | M.HpyF233ORFNP (97% identity) | M.HpyUM065ORF80P | |
| 85 | S | S.HpyLIM7XI (99% identity) | S.HpyUM065ORF80P | |
| 95 | polyphosphate kinase | |||
| 7385 | DNA methyltransferase | |||
| 7390 | M | M.HpySG03ORF4385P (95% identity) | M.HpyUM065ORF7390P | |
| 7395 | S | S.HpyUM065ORF5850P (100% identity) | S.HpyUM065ORF7390P | |
| 5845 | cadmium transporter | |||
| 5850 | S | S.HpyUM065ORF7390P (100% identity) | S.HpyUM065ORF5850P | |
| 5180 | 30 aa hypothetical protein | |||
| 5185 | S | S.HpyUM065ORF5530P (97% identity) | S.HpyUM065ORF5185P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | HpySP325ORF6575P (82% identity) | HpyUM065ORF2180P | |
| 2190 | nicotinate-nucleotide pyrophosphorylase | |||
| 7955 | membrane protein | |||
| 7960 | M | M.Hpy5ORF5760P (98% identity) | ATTAAT | M.HpyUM065ORF7960P |
| 7965 | glycosyltransferase 9 family protein | |||
| 2935 | DEAD/DEAH box helicase | |||
| ??? | RM | HpyID5ORF7265P (90% identity) | HpyUM065ORF2940P | |
| 2955 | 32 aa hypothetical protein | |||
| 7970 | GTP-binding protein | |||
| 7975 | M | M.HpyMA05ORF2320P (99% identity) | ACGT | M.HpyUM065ORF7975P |
| 7980 | R | HpyK105ORF2465P (100% identity) | ACGT | HpyUM065ORF7975P |
| 7985 | catalase | |||
| 7595 | biotin carboxylase | |||
| ??? | M | M.HpyJF13ORF1065P (100% identity) | TCNNGA | M.HpyUM065ORF7600P |
| 7605 | R | Hpyfe93ORF2050P (98% identity) | TCNNGA | HpyUM065ORF7600P |
| 7610 | Laminin subunit alpha-2 precursor | |||
| 2095 | sodium:proline symporter | |||
| 2175 | M | M2.Hpyfe16ORF1195P (93% identity) | CCTC | M2.HpyUM065ORF2175P |
| 2100 | M | M2.Hpyfe51ORF7020P (98% identity) | CCTC | M1.HpyUM065ORF2175P |
| 2105 | 49 aa hypothetical protein | |||
| 7460 | ATP-dependent DNA helicase | |||
| 7465 | M | M.HpyK051VII (99% identity) | GTNNAC | M.HpyUM065ORF7465P |
| 7470 | R | HpyJ017ORF4555P (95% identity) | GTNNAC | HpyUM065ORF7465P |
| 7475 | flagellar hook protein FlgE | |||
| 6750 | 144 aa hypothetical protein | |||
| 6755 | M | M.HpyK119X (98% identity) | GCGC | M.HpyUM065ORF6755P |
| 6760 | flgM protein | |||
| 1830 | chemotaxis protein | |||
| 1835 | M | M.Hpy155ORF2060P (99% identity) | ACGG | M.HpyUM065ORF1835P |
| 1840 | R | Hpyfe81ORF1020P (100% identity) | ACGG | HpyUM065ORF1835P |
| 1845 | 41 aa hypothetical protein | |||
| 7830 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7835 | M | M.Hpyfe24ORF555P (99% identity) | CGCG | M.HpyUM065ORF7835P |
| 7840 | R | HpyF234ORFSP (99% identity) | CGCG | HpyUM065ORF7835P |
| 7845 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 2155 | DNA methyltransferase | |||
| 2160 | R | Hpyfe49ORF7045P (97% identity) | GANTC | HpyUM065ORF2155P |
| 2165 | M | M.Hpyfe58ORF7100P (99% identity) | GANTC | M.HpyUM065ORF2155P |
| 2170 | 49 aa hypothetical protein | |||
| 7375 | membrane protein | |||
| 7380 | R | HpyBS22ORF3200P (97% identity) | GGCC | HpyUM065ORF7385P |
| 7385 | M | M.HpysHP34ORF6260P (99% identity) | GGCC | M.HpyUM065ORF7385P |
| 7390 | type I restriction endonuclease | |||
| 6045 | serine acetyltransferase | |||
| 6050 | R | R2.HpyF233ORFUP (94% identity) | CATG | HpyUM065ORF6060P |
| 6055 | 94 aa hypothetical protein | |||
| 6060 | M | M.HpyOK95ORFUP (98% identity) | CATG | M.HpyUM065ORF6060P |
| 6065 | hydrolase | |||
| 1895 | alpha-1,2-fucosyltransferase | |||
| 1900 | M | M.Hpy53ORFAP (97% identity) | GATC | M.HpyUM065ORF1900P |
| 1905 | R | HpyMA15XIIP (62% identity) | GATC | HpyUM065ORF1900P |
| 1915 | malonyl CoA-ACP transacylase | |||
| 5430 | type II restriction endonuclease | |||
| ??? | RM | HpyBS07ORF1315P (87% identity) | HpyUM065ORF5430P | |
| 5440 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 3180 | amidophosphoribosyltransferase | |||
| 3185 | RM | Hpybs1ORFB1P (98% identity) | HpyUM065ORF3185P | |
| 3190 | S | S.HpyTW24ORF7170P (49% identity) | S.HpyUM065ORF3185P | |
| 3195 | DNA polymerase I | |||
| 980 | molecular chaperone ClpB | |||
| 985 | M | M.Hpyfe38ORF5830P (99% identity) | CCGG | M.HpyUM065ORF985P |
| ??? | R | HpyK035ORF1405P (91% identity) | CCGG | HpyUM065ORF985P |
| 995 | exodeoxyribonuclease VII large subunit | |||
| 2735 | 142 aa hypothetical protein | |||
| 2740 | R | Hpyfe112ORF6720P (99% identity) | TGCA | HpyUM065ORF2745P |
| ??? | M | type II methylase | TGCA | M.HpyUM065ORF2745P |
| 2750 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2930 | M | M.HpyUM038ORF805P (29% identity) | M.HpyUM065ORF2930P | |
| 2935 | R | HpyTN2ORF14590P (97% identity) | HpyUM065ORF2930P | |
| 2940 | type II restriction-modification enzyme | |||
| 3380 | biotin synthase | |||
| 3385 | R | HpyOK304ORFEP (88% identity) | HpyUM065ORF3390P | |
| 3390 | M | M.Hpyfe6ORF615P (96% identity) | M.HpyUM065ORF3390P | |
| 3395 | multidrug resistance protein | |||
| 2240 | chemotaxis protein CheY | |||
| 2245 | M | M.Hpyfe102ORF7065P (98% identity) | M.HpyUM065ORF2245P | |
| 2250 | R | Hpyfe123ORF7160P (96% identity) | HpyUM065ORF2245P | |
| 2255 | rod shape-determining protein MreC | |||
| 2920 | ATP-dependent DNA helicase RecG | |||
| 2925 | M | M.Hpyfe57ORF40P (68% identity) | M.HpyUM065ORF2925P | |