Helicobacter pylori UM037 |
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Putative Helicobacter pylori UM037 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,723,664 bp
GenBank #: AUSI00000000 (NZ_AUSI00000000)
REBASE acronym: HpyUM037
Org_num: 10627
All begin N198_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6325 | S | S.HpyKH41ORFTP (97% identity) | S.HpyUM037ORF1290P | |
| 6330 | 30 aa hypothetical protein | |||
| 8980 | CAAX protease | |||
| 8985 | S | S.Hpy1846ORF950P (97% identity) | S.HpyUM037ORF715P | |
| 1760 | pseudogene | |||
| ??? | R | HpyU203ORF7570P (67% identity) | HpyUM037ORF545P | |
| 1770 | integrase | |||
| 6315 | formyltetrahydrofolate deformylase | |||
| 6320 | S | S.Hpy499ORF1545P (95% identity) | S.HpyUM037ORF5000P | |
| 65 | 631 aa hypothetical protein | |||
| ??? | R | HpySP504ORF2130P (89% identity) | HpyUM037ORF3770P | |
| 85 | M | M.HpyK117ORF2250P (87% identity) | M.HpyUM037ORF3770P | |
| 90 | S | S.HpyLIM7XI (98% identity) | S.HpyUM037ORF3770P | |
| 100 | polyphosphate kinase | |||
| 3100 | membrane protein | |||
| 3105 | M | M.HpyK008ORF2545P (74% identity) | M.HpyUM037ORF4700P | |
| 3110 | S | S.HpySW06ORF2610P (97% identity) | S.HpyUM037ORF4700P | |
| 3115 | R | HpyKH9ORFA1P (95% identity) | HpyUM037ORF4700P | |
| 3120 | hydroxyethylthiazole kinase | |||
| 1895 | integrase | |||
| 1900 | R | HpyISR7ORF7245P (27% identity) | HpyUM037ORF715P | |
| ??? | M | M.HpyU106ORF7545P (94% identity) | M.HpyUM037ORF715P | |
| 1915 | CAAX protease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5270 | 36 aa hypothetical protein | |||
| 5275 | RM | Hpy5016ORF3690P (85% identity) | HpyUM037ORF1650P | |
| 5280 | nicotinate-nucleotide pyrophosphorylase | |||
| 3565 | DEAD/DEAH box helicase | |||
| 3570 | RM | HpyKH28ORFUP (69% identity) | HpyUM037ORF1100P | |
| 3575 | 179 aa hypothetical protein | |||
| 8095 | membrane protein | |||
| 8100 | M | 121 aa hypothetical protein | TCGA | M.HpyUM037ORF7195P |
| 8105 | exodeoxyribonuclease VII large subunit | |||
| 8650 | catalase | |||
| ??? | R | HpyKH21ORFZP (97% identity) | ACGT | HpyUM037ORF3880P |
| 8660 | M | M.HpyLI41ORF2400P (97% identity) | ACGT | M.HpyUM037ORF3880P |
| 8665 | type II restriction endonuclease | |||
| 5825 | membrane protein | |||
| 5830 | RM | HpyBG3ORF3425P (90% identity) | GTGGNAG | HpyUM037X |
| 5835 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 8660 | DNA methyltransferase | |||
| 8665 | R | HpyPU001IIP (99% identity) | ACNGT | HpyUM037IIP |
| 8670 | M | M.HpyMM01II (98% identity) | ACNGT | M.HpyUM037II |
| 8675 | GTP-binding protein | |||
| 5240 | peptidase S41 | |||
| 5245 | R | HpySP509VIIP (97% identity) | GANTC | HpyUM037IVP |
| 5250 | M | M.HpySP210VI (99% identity) | GANTC | M.HpyUM037IV |
| 5255 | 51 aa hypothetical protein | |||
| 8680 | glycosyltransferase 9 family protein | |||
| 8685 | M | M.HpyKH20ORFZP (99% identity) | ATTAAT | M.HpyUM037VII |
| 8690 | membrane protein | |||
| 5060 | DNA gyrase subunit B | |||
| ??? | M | M.HpyKH1ORFQP (100% identity) | GTAC | M.HpyUM037XI |
| 5070 | restriction endonuclease R.HpyAXII | |||
| ??? | adenine methyltransferase M.HpyAXII | |||
| 5070 | R | HpyR08XIP (99% identity) | GTAC | HpyUM037ORF4000P |
| 5075 | membrane protein | |||
| 1065 | sodium:proline symporter | |||
| 1070 | M | M.HpyKH20ORFLP (100% identity) | CCTTC | M.HpyUM037ORF8285P |
| 1725 | R | HpyKH26ORFRP (99% identity) | CCTTC | HpyUM037ORF8285P |
| ??? | 99 aa hypothetical protein K750_09180 | |||
| 4805 | hydrolase | |||
| 4810 | M | M.HpyNP10I (98% identity) | CATG | M.HpyUM037I |
| 4815 | 59 aa hypothetical protein | |||
| 1725 | pseudogene | |||
| ??? | R | 99 aa hypothetical protein K750_09180 | CCTC | HpyUM037ORF8305P |
| ??? | M | M1.HpyKH21ORFNP (49% identity) | CCTC | M2.HpyUM037ORF8305P |
| 1075 | M | M1.HpyKH21ORFNP (99% identity) | CCTC | M1.HpyUM037ORF8305P |
| 1080 | agmatine deiminase | |||
| 6200 | Laminin subunit alpha-2 precursor | |||
| ??? | R | HpyK110ORF1170P (98% identity) | TCNNGA | HpyUM037ORF7015P |
| 6210 | M | M.HpyKH18ORFB1P (94% identity) | TCNNGA | M.HpyUM037ORF7015P |
| 6215 | 127 aa hypothetical protein | |||
| 2050 | flgM protein | |||
| ??? | M | M.HpyPU009ORF5295P (97% identity) | GCGC | M.HpyUM037ORF2840P |
| 2060 | 144 aa hypothetical protein | |||
| 5535 | ATP-dependent DNA helicase | |||
| 5540 | M | M.HpyNP10VII (97% identity) | GTNNAC | M.HpyUM037V |
| 5545 | R | HpyNP10VIIP (98% identity) | GTNNAC | HpyUM037VP |
| 5550 | flagellar hook protein FlgE | |||
| 3680 | membrane protein | |||
| 3685 | R | HpyFD662ORF310P (97% identity) | CCATC | HpyUM037VIP |
| 3690 | M | M2.HpyUM023ORF1405P (100% identity) | CCATC | M2.HpyUM037VI |
| 3695 | M | M1.HpyGE9III (99% identity) | CCATC | M1.HpyUM037VI |
| 3700 | permease | |||
| 2080 | 256 aa hypothetical protein | |||
| ??? | M | 217 aa hypothetical protein K750_02870 | TCGA | M.HpyUM037ORF2870P |
| 2090 | 32 aa hypothetical protein | |||
| 845 | alpha-1,2-fucosyltransferase | |||
| 850 | M | M.HpyLI30X (97% identity) | GATC | M.HpyUM037III |
| 955 | pseudogene | |||
| 2090 | 32 aa hypothetical protein | |||
| 2095 | R | HpyP004IVP (98% identity) | CCGG | HpyUM037IXP |
| 2100 | M | M.HpyKH8ORFSP (99% identity) | CCGG | M.HpyUM037IX |
| 2105 | molecular chaperone ClpB | |||
| 3825 | amidophosphoribosyltransferase | |||
| 3830 | RM | HpyUM084ORF1905P (96% identity) | HpyUM037ORF835P | |
| 3835 | S | S.HpyP009ORF7325P (94% identity) | S.HpyUM037ORF835P | |
| 3840 | DNA polymerase I | |||
| 540 | 156 aa hypothetical protein | |||
| 545 | M | M.HpyJO10ORF3945P (99% identity) | GCNGC | M.HpyUM037ORF3330P |
| 550 | elongation factor 4 | |||
| 1650 | elongation factor Ts | |||
| 1655 | R | HpyKH36ORFFP (100% identity) | TGCA | HpyUM037VIIIP |
| 1660 | M | M.HpyI004V (98% identity) | TGCA | M.HpyUM037VIII |
| 1665 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5330 | chemotaxis protein CheY | |||
| 5335 | M | M.HpyT001XVII (95% identity) | GGCAA | M.HpyUM037XII |
| 5460 | R | HpyKH27ORFWP (84% identity) | GGCAA | HpyUM037XIIP |
| 5340 | rod shape-determining protein MreC | |||
| 3545 | ATP-dependent DNA helicase RecG | |||
| 3550 | M | M.HpyME41ORF7315P (95% identity) | M.HpyUM037ORF8995P | |
| 5395 | endonuclease | |||
| ??? | M | M.HpyI009ORF7025P (83% identity) | M.HpyUM037ORF1490P | |
| 5410 | R | HpyBGR5ORF6970P (93% identity) | HpyUM037ORF1490P | |
| 5415 | type III restriction-modification enzyme domain | |||