Helicobacter pylori UM114 |
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Putative Helicobacter pylori UM114 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,708,937 bp
GenBank #: AUSS00000000 (NZ_AUSS00000000)
REBASE acronym: HpyUM114
Org_num: 11542
All begin N207_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6600 | S | S.HpyBG2ORF2265P (96% identity) | S.HpyUM114ORF6600P | |
| 6605 | cadmium transporter | |||
| 7245 | S | S.HpyUM114ORF7955P (62% identity) | S.HpyUM114ORF7245P | |
| 7250 | 64 aa hypothetical protein | |||
| 7950 | S | S.HpyL001XVI (95% identity) | S.HpyUM114ORF7955P | |
| 7955 | M | M.HpyMA04ORF4005P (97% identity) | M.HpyUM114ORF7955P | |
| 7960 | DNA methyltransferase | |||
| 3100 | R | HpyI001XIVP (70% identity) | HpyUM114ORF3105P | |
| 3105 | M | M.HpyKH31ORFYP (96% identity) | M.HpyUM114ORF3105P | |
| 3110 | S | S.HpyMM07ORF2110P (99% identity) | S.HpyUM114ORF3105P | |
| 3120 | polyphosphate kinase | |||
| 535 | 33 aa hypothetical protein | |||
| 540 | S | S.HpyCOL109ORF7735P (95% identity) | S.HpyUM114ORF545P | |
| 545 | M | M.HpyMA02ORF7510P (89% identity) | M.HpyUM114ORF545P | |
| 550 | R | HpyMA16XIIP (96% identity) | HpyUM114ORF545P | |
| 555 | metal-dependent hydrolase | |||
| 6905 | hydroxyethylthiazole kinase | |||
| 6910 | R | HpyKH11ORFRP (96% identity) | HpyUM114ORF6910P | |
| 6915 | 266 aa hypothetical protein | |||
| 6910 | DEAD/DEAH box helicase | |||
| 6915 | S | S.HpyUM114ORF7955P (62% identity) | S.HpyUM114ORF6915P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8560 | membrane protein | |||
| 8565 | M | M.HpyFD423ORFFP (98% identity) | ATTAAT | M.HpyUM114ORF8565P |
| 8570 | glycosyltransferase 9 family protein | |||
| 3990 | molecular chaperone ClpB | |||
| 3995 | M | M.HpyKH43ORFGP (99% identity) | CCGG | M.HpyUM114ORF3995P |
| 4000 | R | HpyGRE018VP (96% identity) | CCGG | HpyUM114ORF3995P |
| 4005 | DNA methyltransferase | |||
| 8575 | GTP-binding protein | |||
| 8580 | M | M.HpyMA17VIII (99% identity) | ACNGT | M.HpyUM114ORF8580P |
| 8585 | type II restriction endonuclease | |||
| 7955 | type I restriction endonuclease | |||
| 7960 | M | M.HpyNP07ORF2450P (98% identity) | GGCC | M.HpyUM114ORF7960P |
| 7965 | R | HpyMM08ORF4010P (98% identity) | GGCC | HpyUM114ORF7960P |
| 7970 | membrane protein | |||
| 4000 | 231 aa hypothetical protein | |||
| 4005 | M | M.HpyMM01ORF1255P (86% identity) | TCGA | M.HpyUM114ORF4005P |
| 4010 | exodeoxyribonuclease VII large subunit | |||
| 8580 | 309 aa hypothetical protein | |||
| 8585 | R | HpyKH45ORFA1P (100% identity) | ACNGT | HpyUM114ORF8585P |
| 8590 | DNA methyltransferase | |||
| 8145 | 38 aa hypothetical protein | |||
| 8150 | M | M.HpyUM067ORF7775P (97% identity) | GCGC | M.HpyUM114ORF8150P |
| 8155 | flgM protein | |||
| 8585 | type II restriction endonuclease | |||
| 8590 | M | M.HpyBS07ORF295P (97% identity) | ACGT | M.HpyUM114ORF8590P |
| ??? | R | 186 aa hypothetical protein | HpyUM114ORF8590P | |
| 8595 | 35 aa hypothetical protein | |||
| 1635 | malonyl CoA-ACP transacylase | |||
| 1645 | R | HpyMA16IIP (99% identity) | GATC | HpyUM114ORF1650P |
| 1650 | M | M.HpyMA25VI (98% identity) | GATC | M.HpyUM114ORF1650P |
| 1655 | alpha-1,2-fucosyltransferase | |||
| 7670 | ATP-dependent DNA helicase | |||
| 7675 | M | M.HpyMM01XIII (97% identity) | GTNNAC | M.HpyUM114ORF7675P |
| 7680 | R | HpyNP09XIIIP (98% identity) | GTNNAC | HpyUM114ORF7675P |
| 7685 | flagellar hook protein FlgE | |||
| 185 | DNA polymerase I | |||
| 190 | S | S.HpyKH11ORFQP (96% identity) | S.HpyUM114ORF195P | |
| 195 | RM | HpyKH7ORFHP (98% identity) | HpyUM114ORF195P | |
| 200 | amidophosphoribosyltransferase | |||
| 7110 | 59 aa hypothetical protein | |||
| 7115 | M | M.HpyMA25I (96% identity) | CATG | M.HpyUM114ORF7115P |
| 7120 | hydrolase | |||
| 6525 | nicotinate-nucleotide pyrophosphorylase | |||
| 6530 | RM | HpySP407ORF6595P (82% identity) | HpyUM114ORF6530P | |
| 6535 | DNA methylase | |||
| 6530 | DNA methyltransferase | |||
| 6535 | M | M.Hpy310ORF47P (100% identity) | GANTC | M.HpyUM114ORF6535P |
| 6540 | 57 aa hypothetical protein | |||
| ??? | R | HpyMA25ORF6550P (98% identity) | GANTC | HpyUM114ORF6535P |
| 6555 | peptidase S41 | |||
| 5060 | biotin carboxylase | |||
| 5065 | M | M.HpyMA17XIII (99% identity) | TCNNGA | M.HpyUM114ORF5065P |
| 5070 | R | HpyMA17XIIIP (99% identity) | TCNNGA | HpyUM114ORF5065P |
| 5075 | Laminin subunit alpha-2 precursor | |||
| 325 | permease | |||
| 330 | M | M.HpyV001ORF7265P (99% identity) | GDGCHC | M.HpyUM114ORF330P |
| 335 | endonuclease | |||
| 330 | DNA methyltransferase | |||
| 335 | R | endonuclease | HpyUM114ORF335P | |
| 340 | membrane protein | |||
| 430 | 94 aa hypothetical protein | |||
| 435 | RM | HpyMA02XIII (95% identity) | HpyUM114ORF435P | |
| 440 | type I restriction endonuclease | |||
| 3725 | 124 aa hypothetical protein | |||
| 3730 | M | M.HpyF232ORFNP (99% identity) | CTNAG | M.HpyUM114ORF3730P |
| 3735 | R | HpyUM084ORF1020P (72% identity) | CTNAG | HpyUM114ORF3730P |
| 3740 | 293 aa hypothetical protein | |||
| 2730 | glycerol-3-phosphate dehydrogenase subunit C | |||
| ??? | RM | HpyKH1ORFGP (64% identity) | HpyUM114ORF2735P | |
| 2750 | 823 aa hypothetical protein | |||
| 1160 | agmatine deiminase | |||
| ??? | M | M.Hpy49ORF230P (68% identity) | M.HpyUM114ORF1165P | |
| 1175 | DNA methyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 460 | M | M.HpyCHN4ORF7205P (67% identity) | M.HpyUM114ORF460P | |
| 465 | ATP-dependent DNA helicase RecG | |||
| 6390 | biotin synthase | |||
| 6395 | R | HpyKH10ORFC1P (94% identity) | HpyUM114ORF6400P | |
| 6400 | M | M.HpyMA16ORF6875P (96% identity) | M.HpyUM114ORF6400P | |
| 6405 | 36 aa hypothetical protein | |||
| 2350 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 2355 | R | HpyFD430ORFI1P (96% identity) | HpyUM114ORF2360P | |
| 2360 | M | M.HpyKH37ORFRP (96% identity) | M.HpyUM114ORF2360P | |
| 2365 | 54 aa hypothetical protein | |||
| 6460 | rod shape-determining protein MreC | |||
| 6465 | R | HpyMA02ORF6570P (92% identity) | HpyUM114ORF6470P | |
| 6470 | M | M.HpyMA17ORF6440P (96% identity) | M.HpyUM114ORF6470P | |
| 6475 | chemotaxis protein CheY | |||
| 445 | 712 aa hypothetical protein | |||
| 450 | R | HpyMA19ORF7130P (96% identity) | HpyUM114ORF455P | |
| 455 | M | M.HpyUM084ORF2180P (29% identity) | M.HpyUM114ORF455P | |