Helicobacter pylori UM084 |
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Putative Helicobacter pylori UM084 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,656,826 bp
GenBank #: AUSO00000000 (NZ_AUSO00000000)
REBASE acronym: HpyUM084
Org_num: 11546
All begin N203_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6165 | S | S.HpyPE19ORF2730P (50% identity) | S.HpyUM084ORF6165P | |
| 6170 | membrane protein | |||
| 7150 | S | S.HpyUM084ORF7450P (47% identity) | S.HpyUM084ORF7150P | |
| 7155 | cadmium transporter | |||
| 7940 | membrane protein | |||
| 7945 | M | M.HpyFD662ORF6645P (89% identity) | M.HpyUM084ORF7945P | |
| 7950 | 202 aa hypothetical protein | |||
| 7945 | type I restriction endonuclease | |||
| 7950 | S | S.HpyUM084ORF7450P (47% identity) | S.HpyUM084ORF7150P | |
| 7440 | hydroxyethylthiazole kinase | |||
| 7450 | R | HpyNAB47ORFFP (83% identity) | HpyUM084ORF7450P | |
| 7455 | S | S.HpyMA25X (96% identity) | S.HpyUM084ORF7450P | |
| 2265 | 36 aa hypothetical protein | |||
| 2270 | S | S.HpyB147ORF385P (96% identity) | S.HpyUM084ORF2305P | |
| 2305 | M | M.HpyKH22ORFJP (96% identity) | M.HpyUM084ORF2305P | |
| 2275 | R | HpyKH28ORFCP (95% identity) | HpyUM084ORF2305P | |
| 2280 | metal-dependent hydrolase | |||
| 1630 | polyphosphate kinase | |||
| 1640 | S | S.HpyIS8ORF2410P (96% identity) | S.HpyUM084ORF1640P | |
| 1645 | N-6 DNA methylase | |||
| 1650 | R | HpyBG2ORF1990P (92% identity) | HpyUM084ORF1640P | |
| 1655 | 631 aa hypothetical protein | |||
| 1640 | type I restriction endonuclease subunit S | |||
| 1645 | M | M.HpyBG2ORF1990P (97% identity) | M.HpyUM084ORF1645P | |
| 1650 | restriction endonuclease subunit R | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8520 | R | HpySP508IXP (95% identity) | GANTC | HpyUM084ORF8525P |
| 8525 | M | M.HpyMM05V (98% identity) | GANTC | M.HpyUM084ORF8525P |
| 8530 | 149 aa hypothetical protein | |||
| 8435 | membrane protein | |||
| 8440 | M | M.HpyMM07II (97% identity) | ATTAAT | M.HpyUM084ORF8440P |
| 8445 | glycosyltransferase 9 family protein | |||
| 8525 | DNA methylase N-4 | |||
| 8530 | RM | 149 aa hypothetical protein | HpyUM084ORF6160P | |
| 8450 | GTP-binding protein | |||
| 8455 | M | M.HpyF007III (99% identity) | ACNGT | M.HpyUM084ORF8455P |
| 8460 | R | HpyIS6ORF2735P (98% identity) | ACNGT | HpyUM084ORF8455P |
| 8465 | DNA methyltransferase | |||
| ??? | DNA methylase family protein | |||
| 8285 | M | M2.HpyP105VII (100% identity) | GAAGA | M1.HpyUM084ORF8285P |
| 8290 | M | M2.HpyKH37ORFXP (99% identity) | GAAGA | M2.HpyUM084ORF8285P |
| 8295 | R | HpyNCI2aIIP (94% identity) | GAAGA | HpyUM084ORF8285P |
| 8300 | chemotaxis protein CheY | |||
| 7985 | 144 aa hypothetical protein | |||
| 7990 | M | M.HpyUM067ORF7775P (96% identity) | GCGC | M.HpyUM084ORF7990P |
| 7995 | flgM protein | |||
| 8460 | type II restriction endonuclease | |||
| 8465 | M | M.HpyU422ORF2335P (97% identity) | ACGT | M.HpyUM084ORF8465P |
| 8470 | R | HpyLI25ORF2230P (97% identity) | ACGT | HpyUM084ORF8465P |
| 8475 | catalase | |||
| 745 | exodeoxyribonuclease VII large subunit | |||
| 750 | M | M.HpyFD719ORF1750P (92% identity) | TCGA | M.HpyUM084ORF750P |
| 755 | 204 aa hypothetical protein | |||
| 755 | 204 aa hypothetical protein | |||
| 760 | R | HpyNP03ORF1155P (84% identity) | CCGG | HpyUM084ORF765P |
| 765 | M | M.HpyKH17ORFPP (98% identity) | CCGG | M.HpyUM084ORF765P |
| 770 | molecular chaperone ClpB | |||
| 3295 | malonyl CoA-ACP transacylase | |||
| ??? | R | HpyMA16IIP (95% identity) | GATC | HpyUM084ORF3310P |
| 3310 | M | M.HpyMA17II (96% identity) | GATC | M.HpyUM084ORF3310P |
| 3315 | alpha-1,2-fucosyltransferase | |||
| 8350 | nicotinate-nucleotide pyrophosphorylase | |||
| 8355 | RM | HpySW10ORF6695P (83% identity) | HpyUM084ORF8355P | |
| 7715 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyZ009VI (98% identity) | GTNNAC | M.HpyUM084ORF7720P |
| 7725 | R | HpyFD430ORFB1P (99% identity) | GTNNAC | HpyUM084ORF7720P |
| 7730 | flagellar hook protein FlgE | |||
| 7005 | serine acetyltransferase | |||
| 7010 | R | HpyFD703ORF6460P (96% identity) | CATG | HpyUM084ORF7015P |
| 7015 | M | M.HpyMM08I (98% identity) | CATG | M.HpyUM084ORF7015P |
| 7020 | hydrolase | |||
| 1900 | DNA polymerase I | |||
| 2310 | S | S.HpyBG1XIII (69% identity) | S.HpyUM084ORF1905P | |
| 1905 | RM | HpyNAB47ORFUP (96% identity) | HpyUM084ORF1905P | |
| 1910 | amidophosphoribosyltransferase | |||
| 4815 | Laminin subunit alpha-2 precursor | |||
| 4820 | M | M.HpyMA02II (55% identity) | TCNNGA | M.HpyUM084ORF4820P |
| 4825 | biotin carboxylase | |||
| 6155 | peptidase S41 | |||
| 6160 | RM | 149 aa hypothetical protein | HpyUM084ORF6160P | |
| 5805 | 420 aa hypothetical protein | |||
| 5810 | M | M.HpyMM03X (99% identity) | GATATC | M.HpyUM084ORF5810P |
| 5855 | R | HpyMM03XP (99% identity) | GATATC | HpyUM084ORF5810P |
| 5850 | pseudogene | |||
| 6715 | 36 aa hypothetical protein | |||
| ??? | M | M.HpyFD719ORF7810P (98% identity) | TCNGA | M.HpyUM084ORF6720P |
| 6730 | R | HpyFD719ORF7810P (96% identity) | TCNGA | HpyUM084ORF6720P |
| 6735 | purine nucleoside phosphorylase | |||
| 2035 | permease | |||
| 2040 | M | M1.HpyNP12III (98% identity) | GATGG | M1.HpyUM084ORF2040P |
| 2045 | M | M1.HpySP13IX (99% identity) | CCATC | M2.HpyUM084ORF2040P |
| 2050 | R | HpyKH37ORFHP (97% identity) | CCATC | HpyUM084ORF2040P |
| 2055 | membrane protein | |||
| 1010 | 293 aa hypothetical protein | |||
| ??? | R | HpyKH43ORFHP (100% identity) | CTNAG | HpyUM084ORF1020P |
| 1020 | M | M.HpySG13VI (99% identity) | CTNAG | M.HpyUM084ORF1020P |
| 1025 | 124 aa hypothetical protein | |||
| 2155 | 32 aa hypothetical protein | |||
| ??? | RM | HpyU422ORF7215P (83% identity) | HpyUM084ORF2160P | |
| 2170 | 662 aa hypothetical protein | |||
| 2910 | agmatine deiminase | |||
| 2915 | M | M.HpyKH31ORFAP (96% identity) | CCTC | M1.HpyUM084ORF2915P |
| 2920 | M | M2.HpyMM03VIP (100% identity) | CCTC | M2.HpyUM084ORF2915P |
| 2925 | sodium:proline symporter | |||
| 4370 | glycerol-3-phosphate dehydrogenase subunit C | |||
| ??? | RM | HpyKH45ORFPP (88% identity) | HpyUM084ORF4375P | |
| 4385 | 449 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8200 | R | HpyFD423ORFUP (92% identity) | HpyUM084ORF8205P | |
| 8205 | M | M.HpyLI10XVII (95% identity) | M.HpyUM084ORF8205P | |
| 8210 | endonuclease | |||
| 8265 | rod shape-determining protein MreC | |||
| 8270 | R | HpyBGR5ORF6895P (89% identity) | HpyUM084ORF8275P | |
| ??? | M | M.HpyMA25ORF6635P (97% identity) | M.HpyUM084ORF8275P | |
| 8285 | 287 aa hypothetical protein | |||
| 3995 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 4000 | R | HpyKH40ORFDP (96% identity) | CTGCAG | HpyUM084ORF4005P |
| 4005 | M | M.HpyMA02XII (95% identity) | M.HpyUM084ORF4005P | |
| 4010 | 54 aa hypothetical protein | |||
| 2170 | 662 aa hypothetical protein | |||
| 2175 | R | HpyKH7ORFJP (96% identity) | HpyUM084ORF2180P | |
| ??? | M | M.HpyNP13ORF6895P (97% identity) | M.HpyUM084ORF2180P | |
| 2190 | ATP-dependent DNA helicase RecG | |||