Helicobacter pylori PZ5086 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori PZ5086 RM systems
Ref: Sheh,A. et al. Genome Announc 1 (5), e00736-13 (2013)
REBASE ref # 16661
Contig set: 1,559,914 bp
GenBank #: ASYW00000000 (NZ_ASYW00000000)
REBASE acronym: Hpy5086
Org_num: 11513
All begin L935_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6500 | S | S.Hpy5009ORF1485P (48% identity) | S.Hpy5086ORF6500P | |
| 6505 | DNA polymerase I | |||
| 7725 | S | S.HpyCOL307ORF2120P (47% identity) | S.Hpy5086ORF7725P | |
| 7740 | polyphosphate kinase | |||
| 6555 | R | Hpy5033ORF1830P (76% identity) | Hpy5086ORF6560P | |
| 6560 | M | M.HpySP318ORF2175P (97% identity) | M.Hpy5086ORF6560P | |
| 6565 | S | 193 aa hypothetical protein | S.Hpy5086ORF6560P | |
| 4335 | hydroxyethylthiazole kinase | |||
| 4340 | R | HpyCOL8ORF2850P (97% identity) | Hpy5086ORF4350P | |
| 4345 | S | S.HpyU407XIII (95% identity) | S.Hpy5086ORF4350P | |
| 4350 | M | M.HpyAL8VI (96% identity) | M.Hpy5086ORF4350P | |
| 4355 | DNA methyltransferase | |||
| 4915 | M | type I restriction endonuclease subunit M | M.Hpy5086ORF4915P | |
| 4920 | CAAX protease | |||
| 4925 | S | S.HpyBR5ORF6765P (46% identity) | S.Hpy5086ORF4915P | |
| 4930 | 29 aa hypothetical protein | |||
| 675 | metal-dependent hydrolase | |||
| 680 | R | HpyG63ORFEP (94% identity) | Hpy5086ORF685P | |
| ??? | M | M.HpyCOL307XII (94% identity) | M.Hpy5086ORF685P | |
| 700 | S | S.HpyGE6IV (97% identity) | S.Hpy5086ORF685P | |
| 705 | 30 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7105 | M | 78 aa hypothetical protein | GATC | M.Hpy5086ORF7105P |
| 7110 | alpha-1,2-fucosyltransferase | |||
| 8535 | RM | Hpy5056ORF7215P (94% identity) | Hpy5086ORF8535P | |
| 8540 | nicotinate-nucleotide pyrophosphorylase | |||
| 2815 | RM | Type IIG restriction-modification enzyme | Hpy5086ORF2815P | |
| ??? | RM | HpyPO101ORF3230P (65% identity) | Hpy5086ORF7915P | |
| 7925 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 235 | 212 aa hypothetical protein | |||
| 240 | M | M.HpyPE130X (99% identity) | TCNNGA | M.Hpy5086ORF240P |
| 245 | R | HpyCOL8XIIIP (100% identity) | TCNNGA | Hpy5086ORF240P |
| 250 | Laminin subunit alpha-2 precursor | |||
| 5805 | M | DNA methyltransferase | GATATC | M.Hpy5086ORF5805P |
| 5810 | type III restriction endonuclease subunit R | |||
| 85 | M | DNA methylase N-4 | GATC | M.Hpy5086ORF85P |
| 90 | R | HpyPE104VIIP (98% identity) | GATC | Hpy5086ORF85P |
| 100 | malonyl CoA-ACP transacylase | |||
| 1430 | membrane protein | |||
| 1435 | R | HpyPU007IVP (98% identity) | CCATC | Hpy5086ORF1440P |
| 1440 | M | M2.HpyPU008III (99% identity) | CCATC | M2.Hpy5086ORF1440P |
| 1445 | M | M1.HpyCOL5II (99% identity) | GATGG | M1.Hpy5086ORF1440P |
| 1450 | permease | |||
| 7810 | R | HpyBR5VIP (100% identity) | GAAGA | Hpy5086ORF7815P |
| 7815 | M | M1.HpyBR5VI (100% identity) | GAAGA | M1.Hpy5086ORF7815P |
| 7820 | M | M.HpyV006VII (100% identity) | GAAGA | M2.Hpy5086ORF7815P |
| 7830 | type III restriction endonuclease subunit M | |||
| 6360 | M | M.HpyCOL118III (99% identity) | ATTAAT | M.Hpy5086ORF6360P |
| 6365 | glycosyltransferase 9 family protein | |||
| 7280 | R | HpyME46XIVP (100% identity) | TGCA | Hpy5086ORF7285P |
| 7285 | M | M.HpyB140ORF8200P (98% identity) | TGCA | M.Hpy5086ORF7285P |
| 7290 | 67 aa hypothetical protein | |||
| ??? | R | HpySP319IP (95% identity) | CATG | Hpy5086ORF7015P |
| 7015 | M | M.HpyL022I (97% identity) | CATG | M.Hpy5086ORF7015P |
| 7020 | hydrolase | |||
| 3470 | R | HpyU302VIP (99% identity) | GANTC | Hpy5086ORF3475P |
| 3475 | M | M.HpyCOL119VIII (100% identity) | GANTC | M.Hpy5086ORF3475P |
| 3480 | 51 aa hypothetical protein | |||
| 1885 | agmatine deiminase | |||
| 1890 | M | M1.HpySORF245P (97% identity) | CCTC | M1.Hpy5086ORF1890P |
| 1895 | M | M2.HpyH026VP (100% identity) | CCTC | M2.Hpy5086ORF1890P |
| ??? | R | HpyKH14ORFKP (86% identity) | CCTC | Hpy5086ORF1890P |
| 1900 | 343 aa hypothetical protein | |||
| 8485 | membrane protein | |||
| ??? | R | HpyCRI4VIIP (95% identity) | GTAC | Hpy5086ORF8500P |
| 8500 | M | M.HpyMT5124VIII (97% identity) | GTAC | M.Hpy5086ORF8500P |
| 8505 | DNA gyrase subunit B | |||
| 4810 | exodeoxyribonuclease VII large subunit | |||
| 4815 | M | M.HpyUM032XVII (98% identity) | TCGA | M.Hpy5086ORF4815P |
| 4820 | 204 aa hypothetical protein | |||
| 585 | acetone carboxylase subunit gamma | |||
| 590 | R | HpyU206ORF3295P (100% identity) | CCNNGG | Hpy5086ORF590P |
| ??? | M | 122 aa hypothetical protein | CCNNGG | M.Hpy5086ORF590P |
| 595 | polysaccharide biosynthesis protein | |||
| 6370 | GTP-binding protein | |||
| 6375 | M | M.HpyH006VIII (98% identity) | ACNGT | M.Hpy5086ORF6375P |
| 6380 | R | HpyC66IIP (99% identity) | ACNGT | Hpy5086ORF6375P |
| 6385 | DNA methyltransferase | |||
| ??? | restriction endonuclease | |||
| 1900 | M | M.Hpy94ORF255P (99% identity) | GTSAC | M.Hpy5086ORF1900P |
| 1905 | R | HpyGRE022XP (98% identity) | GTSAC | Hpy5086ORF1900P |
| 1910 | type II restriction endonuclease | |||
| 155 | 114 aa hypothetical protein | |||
| 160 | M | M.HpyPO104V (99% identity) | CTNAG | M.Hpy5086ORF160P |
| 165 | R | HpyPOR113VP (97% identity) | CTNAG | Hpy5086ORF160P |
| 170 | 249 aa hypothetical protein | |||
| 4820 | 204 aa hypothetical protein | |||
| 4825 | R | HpyLIM8ORF1275P (97% identity) | CCGG | Hpy5086ORF4830P |
| 4830 | M | M.HpyPE117V (99% identity) | CCGG | M.Hpy5086ORF4830P |
| 4835 | molecular chaperone ClpB | |||
| 4350 | type I restriction endonuclease | |||
| 4355 | M | M.HpySP504ORF4055P (100% identity) | GGCC | M.Hpy5086ORF4355P |
| 4360 | R | HpyCOL301ORF4125P (99% identity) | GGCC | Hpy5086ORF4355P |
| 4365 | membrane protein | |||
| 6380 | type II restriction endonuclease | |||
| 6385 | M | M.HpySP312ORF2280P (44% identity) | ACGT | M.Hpy5086ORF6385P |
| 6390 | catalase | |||
| 8160 | flgM protein | |||
| 8165 | M | M.HpyPE104XII (96% identity) | GCGC | M.Hpy5086ORF8165P |
| 8170 | 60 aa hypothetical protein | |||
| 4560 | flagellar hook protein FlgE | |||
| 4565 | R | HpyKH33ORFEP (96% identity) | GTNNAC | Hpy5086ORF4570P |
| 4570 | M | M.Hpyfe15ORF2730P (98% identity) | GTNNAC | M.Hpy5086ORF4570P |
| 4575 | ATP-dependent DNA helicase | |||
| 6850 | amidophosphoribosyltransferase | |||
| 6855 | RM | HpyCRI2XIV (98% identity) | Hpy5086ORF6855P | |
| 6860 | S | S.HpyCA22ORF7220P (51% identity) | S.Hpy5086ORF6855P | |
| 2545 | 449 aa hypothetical protein | |||
| 2550 | RM | helicase | Hpy5086ORF2550P | |
| 8715 | N-acetylneuraminate synthase | |||
| 8720 | R | R2.HpyI012ORF900P (97% identity) | Hpy5086ORF8730P | |
| ??? | ATPase AAA | |||
| ??? | 176 aa hypothetical protein | |||
| 8725 | 256 aa hypothetical protein | |||
| 8730 | M | M1.HpyCRI3ORF1120P (100% identity) | M.Hpy5086ORF8730P | |
| 8735 | elongation factor P | |||
| 5045 | 179 aa hypothetical protein | |||
| 5050 | RM | HpyHORF1395P (91% identity) | Hpy5086ORF5050P | |
| 5055 | 349 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5615 | R | HpySP15XVIP (92% identity) | Hpy5086ORF5620P | |
| ??? | M | M.HpyH005XVII (95% identity) | M.Hpy5086ORF5620P | |
| 5630 | endonuclease | |||
| 7820 | 287 aa hypothetical protein | |||
| 7830 | M | M.HpyCOL119ORF6690P (55% identity) | M.Hpy5086ORF7830P | |
| 765 | ATP-dependent DNA helicase RecG | |||
| 770 | M | M.Hpy449ORF3740P (68% identity) | M.Hpy5086ORF770P | |
| 5060 | 325 aa hypothetical protein | |||
| 5065 | R | HpyPE115ORF7055P (92% identity) | Hpy5086ORF5070P | |
| 5070 | M | M.HpySW17ORF7110P (29% identity) | M.Hpy5086ORF5070P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8720 | llaJI restriction endonuclease | |||
| ??? | R | R1.HpySW17ORF920P (65% identity) | Hpy5086McrBP | |
| ??? | 176 aa hypothetical protein | |||
| ??? | ATPase AAA | |||
| ??? | R | 176 aa hypothetical protein | Hpy5086McrB2P | |
| 8725 | 256 aa hypothetical protein | |||