Helicobacter pylori PZ5026 |
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Putative Helicobacter pylori PZ5026 RM systems
Ref: Sheh,A. et al. Genome Announc 1 (5), e00736-13 (2013)
REBASE ref # 16661
Contig set: 1,622,716 bp
GenBank #: ASYT00000000 (NZ_ASYT00000000)
REBASE acronym: Hpy5026
Org_num: 11510
All begin L932_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4735 | S | 79 aa hypothetical protein | S.Hpy5026ORF4735P | |
| 4740 | R | HpyCOL211ORF4090P (100% identity) | Hpy5026ORF4735P | |
| 2380 | S | 225 aa hypothetical protein | S.Hpy5026ORF2380P | |
| 5040 | S | S.HpyCOL211ORF4090P (43% identity) | S.Hpy5026ORF5045P | |
| 5045 | M | M.HpyCOL211ORF4090P (100% identity) | M.Hpy5026ORF5045P | |
| 5050 | 32 aa hypothetical protein | |||
| 7170 | S | S.HpyCOL211VII (100% identity) | S.Hpy5026ORF7175P | |
| 7200 | pseudogene | |||
| 7175 | M | M.HpyCOL211VII (100% identity) | M.Hpy5026ORF7175P | |
| ??? | R | HpyCOL211VIIP (100% identity) | Hpy5026ORF7175P | |
| 7190 | metal-dependent hydrolase | |||
| 5975 | 631 aa hypothetical protein | |||
| ??? | R | HpyCOL211ORF2175P (100% identity) | Hpy5026ORF5990P | |
| 5990 | M | M.HpyCOL211ORF2175P (100% identity) | M.Hpy5026ORF5990P | |
| 5995 | S | S.HpyCOL211ORF2175P (100% identity) | S.Hpy5026ORF5990P | |
| 6005 | polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1330 | 49 aa hypothetical protein | |||
| 1335 | M | M.HpyCOL211IX (100% identity) | GANTC | M.Hpy5026ORF1330P |
| 1340 | R | HpyCOL211IXP (100% identity) | GANTC | Hpy5026ORF1330P |
| 1345 | peptidase S41 | |||
| 8275 | RM | HpyCOL211ORF6620P (98% identity) | Hpy5026ORF8275P | |
| 8280 | nicotinate-nucleotide pyrophosphorylase | |||
| 6720 | alpha-1,2-fucosyltransferase | |||
| 6725 | M | M.HpyCOL211X (100% identity) | GATC | M.Hpy5026ORF6725P |
| 6735 | malonyl CoA-ACP transacylase | |||
| 6600 | 122 aa hypothetical protein | |||
| 6605 | R | HpyCOL211IVP (100% identity) | CCATC | Hpy5026ORF6610P |
| 6610 | M | M2.HpyCOL211IV (100% identity) | CCATC | M2.Hpy5026ORF6610P |
| 6615 | M | M2.HpyPE108XVI (100% identity) | GATGG | M1.Hpy5026ORF6610P |
| 6620 | permease | |||
| ??? | RM | HpyC026ORF6750P (70% identity) | Hpy5026ORFAP | |
| 4750 | anthranilate synthase | |||
| 4755 | R | HpyME46XIVP (100% identity) | TGCA | Hpy5026ORF4760P |
| 4760 | M | M.HpyPE17IV (100% identity) | TGCA | M.Hpy5026ORF4760P |
| 4765 | 67 aa hypothetical protein | |||
| 2810 | 48 aa hypothetical protein | |||
| 2815 | M | M.HpyCOL211I (100% identity) | CATG | M.Hpy5026ORF2815P |
| 2820 | hydrolase | |||
| 9285 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 9290 | M | M.HpySP313ORF7405P (100% identity) | CGCG | M.Hpy5026ORF9290P |
| 9295 | R | HpySP313ORF7405P (100% identity) | CGCG | Hpy5026ORF9290P |
| 9300 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 9120 | DNA gyrase subunit B | |||
| 9125 | M | M.HpyNCI18VIII (98% identity) | GTAC | M.Hpy5026ORF9125P |
| 9130 | R | HpyCOL211XIP (100% identity) | GTAC | Hpy5026ORF9125P |
| 9135 | membrane protein | |||
| 3185 | type II restriction endonuclease | |||
| 3190 | R | HpyCOL211XIIIP (99% identity) | GTSAC | Hpy5026ORF3185P |
| 3195 | M | M.HpySP325XI (100% identity) | GTSAC | M.Hpy5026ORF3185P |
| 3200 | M | M2.HpyCOL211VIP (98% identity) | CCTC | M2.Hpy5026ORF3185P |
| 3205 | M | M1.HpyCOL211VI (100% identity) | CCTC | M1.Hpy5026ORF3185P |
| 3210 | agmatine deiminase | |||
| 2910 | catalase | |||
| ??? | R | HpyCOL211ORF2280P (100% identity) | ACGT | Hpy5026ORF2920P |
| 2920 | M | M.HpyCOL211ORF2280P (100% identity) | ACGT | M.Hpy5026ORF2920P |
| 2925 | type II restriction endonuclease | |||
| 110 | 125 aa hypothetical protein | |||
| 115 | M | M.HpyDO10VII (100% identity) | CTNAG | M.Hpy5026ORF115P |
| 120 | R | HpySP305VIIP (100% identity) | CTNAG | Hpy5026ORF115P |
| 125 | 293 aa hypothetical protein | |||
| 5090 | flagellar hook protein FlgE | |||
| 5095 | R | HpyCOL211XIIP (100% identity) | GTNNAC | Hpy5026ORF5100P |
| ??? | M | HpyPE17XVP (100% identity) | GTNNAC | M.Hpy5026ORF5100P |
| 5105 | ATP-dependent DNA helicase | |||
| 2090 | 29 aa hypothetical protein | |||
| 2095 | RM | 377 aa hypothetical protein | Hpy5026ORF2095P | |
| 2100 | 32 aa hypothetical protein | |||
| 1525 | 144 aa hypothetical protein | |||
| 1530 | M | M.HpyCOL211XVI (100% identity) | GCGC | M.Hpy5026ORF1530P |
| 1535 | flgM protein | |||
| 905 | molecular chaperone ClpB | |||
| 910 | M | M.HpyPE130ORF1295P (100% identity) | CCGG | M.Hpy5026ORF910P |
| 915 | R | HpyLIM8ORF1275P (100% identity) | CCGG | Hpy5026ORF910P |
| 920 | 204 aa hypothetical protein | |||
| 2920 | DNA methyltransferase | |||
| 2925 | R | HpySP405IIP (100% identity) | ACNGT | Hpy5026ORF2930P |
| 2930 | M | M.HpySP413II (100% identity) | ACNGT | M.Hpy5026ORF2930P |
| 2935 | GTP-binding protein | |||
| 7335 | amidophosphoribosyltransferase | |||
| 7340 | RM | HpyCOL211ORF7195P (100% identity) | Hpy5026ORF7340P | |
| 7345 | S | S.HpyCOL211ORF7195P (100% identity) | S.Hpy5026ORF7340P | |
| 7350 | DNA polymerase I | |||
| 920 | 204 aa hypothetical protein | |||
| 925 | M | M.HpyLIM1XII (98% identity) | TCGA | M.Hpy5026ORF925P |
| 930 | exodeoxyribonuclease VII large subunit | |||
| 1460 | Laminin subunit alpha-2 precursor | |||
| ??? | R | HpyU208ORF1415P (100% identity) | TCNNGA | Hpy5026ORFBP |
| ??? | M | M.HpySP302XIII (88% identity) | TCNNGA | M.Hpy5026ORFBP |
| 1470 | methyltransferase | |||
| 4310 | polysaccharide biosynthesis protein | |||
| 4315 | M | M.HpyCOL211V (100% identity) | CCNNGG | M.Hpy5026ORF4315P |
| 4320 | R | HpyMT5105IIP (100% identity) | CCNNGG | Hpy5026ORF4315P |
| 4325 | acetone carboxylase subunit gamma | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2375 | M | M.HpyCOL211ORF6680P (91% identity) | M.Hpy5026ORF2375P | |
| 2355 | rod shape-determining protein MreC | |||
| 2360 | R | HpyCOL211ORF6680P (100% identity) | Hpy5026ORF2365P | |
| 2365 | M | M.HpyH024ORF380P (44% identity) | M.Hpy5026ORF2365P | |
| 2105 | 834 aa hypothetical protein | |||
| 2110 | R | HpyCOL211ORF7430P (100% identity) | Hpy5026ORF2115P | |
| 2115 | M | M.HpyCOL211ORF7430P (31% identity) | M.Hpy5026ORF2115P | |
| 2230 | endonuclease | |||
| 2235 | M | M.HpyCOL211ORF6745P (100% identity) | M.Hpy5026ORF2235P | |
| 2240 | R | HpyCOL211ORF6745P (97% identity) | Hpy5026ORF2235P | |
| 7105 | ATP-dependent DNA helicase RecG | |||
| 7110 | M | M.HpyCOL211ORF7430P (69% identity) | M.Hpy5026ORF7110P | |