Helicobacter pylori PZ5004 |
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Putative Helicobacter pylori PZ5004 RM systems
Ref: Sheh,A. et al. Genome Announc 1 (5), e00736-13 (2013)
REBASE ref # 16661
Contig set: 1,586,499 bp
GenBank #: ASZF00000000 (NZ_ASZF00000000)
REBASE acronym: Hpy5004
Org_num: 11514
All begin L930_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3945 | S | S.HpyCOL207ORF3815P (50% identity) | S.Hpy5004ORF3945P | |
| 3950 | 67 aa hypothetical protein | |||
| 9370 | S | 127 aa hypothetical protein | S.Hpy5004ORF9370P | |
| 5245 | 231 aa hypothetical protein | |||
| 5250 | R | HpyCOL207XVIP (99% identity) | Hpy5004ORF5255P | |
| 5255 | M | M.HpyCOL208ORF6835P (100% identity) | M.Hpy5004ORF5255P | |
| 2120 | S | 111 aa hypothetical protein | S.Hpy5004ORF2120P | |
| 7345 | hydroxyethylthiazole kinase | |||
| 7350 | R | HpyCOL207XIXP (100% identity) | Hpy5004ORF7350P | |
| 7355 | S | 122 aa hypothetical protein | S.Hpy5004ORF7350P | |
| 7110 | S | type I restriction endonuclease subunit S | S.Hpy5004ORF7115P | |
| 7115 | M | M.HpyCOL207XIX (33% identity) | M.Hpy5004ORF7115P | |
| 4570 | polyphosphate kinase | |||
| 4585 | S | S.HpyCOL207ORF2165P (100% identity) | S.Hpy5004ORF4585P | |
| 4590 | R | HpyCOL207ORF2165P (93% identity) | Hpy5004ORF4585P | |
| 5305 | DNA methyltransferase | |||
| 5310 | M | M.HpyMT5119ORF4060P (63% identity) | M.Hpy5004ORF5310P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6330 | sodium:proline symporter | |||
| 6335 | M | M.HpyNG19V (100% identity) | CCTTC | M.Hpy5004ORF6335P |
| 6340 | R | HpyCOL207VP (100% identity) | CCTTC | Hpy5004ORF6335P |
| 6345 | type II restriction endonuclease | |||
| 6840 | type III restriction endonuclease subunit M | |||
| 6845 | M | M.Hpy5005ORF4310P (99% identity) | GAAGA | M.Hpy5004ORF6845P |
| 6850 | 34 aa hypothetical protein | |||
| 3700 | M | M.HpyCOL207ORF2250P (100% identity) | ATTAAT | M.Hpy5004ORF3700P |
| 3655 | GTP-binding protein | |||
| 1800 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1805 | R | HpyU420VIP (100% identity) | GAATTC | Hpy5004ORF1810P |
| 1810 | M | M.HpyU003VII (100% identity) | GAATTC | M.Hpy5004ORF1810P |
| 1815 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 4725 | hydrolase | |||
| 4730 | M | M.HpyCOL207I (100% identity) | CATG | M.Hpy5004ORF4730P |
| 4735 | R | HpyCOL307IP (100% identity) | CATG | Hpy5004ORF4730P |
| 3395 | membrane protein | |||
| ??? | R | HpyCOL207IXP (100% identity) | GTAC | Hpy5004ORF3410P |
| 3410 | M | M.HpyCRI3ORF4570P (97% identity) | GTAC | M.Hpy5004ORF3410P |
| 3415 | DNA gyrase subunit B | |||
| 3655 | GTP-binding protein | |||
| 3660 | M | M.HpyCOL207II (100% identity) | ACNGT | M.Hpy5004ORF3660P |
| 3665 | R | HpyMT5105XIVP (88% identity) | ACNGT | Hpy5004ORF3660P |
| 3705 | pseudogene | |||
| 6600 | exodeoxyribonuclease VII large subunit | |||
| 6605 | M | M.HpyNCI57VI (98% identity) | TCGA | M.Hpy5004ORF6605P |
| 6610 | endonuclease MjaVIP | |||
| 2040 | 144 aa hypothetical protein | |||
| 2045 | M | M.HpyCOL208XVII (100% identity) | GCGC | M.Hpy5004ORF2045P |
| 2050 | flgM protein | |||
| 5300 | membrane protein | |||
| 5315 | R | HpyCOL207ORF4115P (100% identity) | GGCC | Hpy5004ORF5305P |
| 5305 | M | M.HpySP308ORF5130P (100% identity) | GGCC | M.Hpy5004ORF5305P |
| 5310 | 342 aa hypothetical protein | |||
| 5580 | chemotaxis protein CheY | |||
| 5585 | C | C2.HpyU005IVP (100% identity) | C.Hpy5004ORF5595P | |
| 5590 | R | HpySP308VIIP (100% identity) | GTCTC | Hpy5004ORF5595P |
| 5595 | M | M2.HpyME27ORF2110P (100% identity) | GTCTC | M1.Hpy5004ORF5595P |
| 5600 | M | M1.HpyT005ORF2145P (100% identity) | GTCTC | M2.Hpy5004ORF5595P |
| 5605 | 59 aa hypothetical protein | |||
| 265 | 722 aa hypothetical protein | |||
| 270 | RM | HpyCOL207XVIII (100% identity) | Hpy5004ORF270P | |
| 275 | 176 aa hypothetical protein | |||
| 6340 | 419 aa hypothetical protein | |||
| 6345 | M | M2.HpyNG19IVP (100% identity) | CCTC | M2.Hpy5004ORF6345P |
| 6350 | M | M1.HpyMT5105III (100% identity) | CCTC | M1.Hpy5004ORF6345P |
| 6355 | agmatine deiminase | |||
| 2910 | flagellar hook protein FlgE | |||
| 2915 | R | HpyCOL207XIP (100% identity) | GTNNAC | Hpy5004ORF2920P |
| ??? | M | M.HpyCOL207XI (100% identity) | GTNNAC | M.Hpy5004ORF2920P |
| 2925 | ATP-dependent DNA helicase | |||
| 6605 | DNA methyltransferase | |||
| 6610 | R | Hpy5024ORF8065P (100% identity) | CCGG | Hpy5004ORF6615P |
| 6615 | M | M.HpyU434IV (100% identity) | CCGG | M.Hpy5004ORF6615P |
| 6620 | molecular chaperone ClpB | |||
| 3665 | type II restriction endonuclease | |||
| 3705 | M | M.HpyCOL207ORF2275P (100% identity) | ACGT | M.Hpy5004ORF3705P |
| ??? | R | HpyCOL207ORF2275P (100% identity) | ACGT | Hpy5004ORF3705P |
| 3680 | 42 aa hypothetical protein | |||
| 5810 | purine nucleoside phosphorylase | |||
| 5845 | R | HpyCOL207XIIIP (100% identity) | TCNGA | Hpy5004ORF5815P |
| 5815 | M | M.HpyCOL207XIII (100% identity) | TCNGA | M.Hpy5004ORF5815P |
| 5820 | 31 aa hypothetical protein | |||
| 4245 | amidophosphoribosyltransferase | |||
| 4250 | RM | HpyMT5111ORF7145P (100% identity) | Hpy5004ORF4250P | |
| 4255 | S | S.HpyCOL207ORF7140P (100% identity) | S.Hpy5004ORF4250P | |
| 4260 | DNA polymerase I | |||
| 7795 | alpha-1,2-fucosyltransferase | |||
| 7800 | M | M.HpyCOL207ORF465P (100% identity) | GATC | M.Hpy5004ORF7800P |
| 7825 | R | HpyCOL207ORF465P (100% identity) | GATC | Hpy5004ORF7800P |
| 7810 | malonyl CoA-ACP transacylase | |||
| 8530 | 67 aa hypothetical protein | |||
| 8535 | M | M.HpyU202XIV (100% identity) | TGCA | M.Hpy5004ORF8535P |
| 8540 | R | HpyZ011XIP (100% identity) | TGCA | Hpy5004ORF8535P |
| 8545 | chemotaxis protein CheY | |||
| 3245 | Laminin subunit alpha-2 precursor | |||
| 3250 | R | HpySP13XIP (100% identity) | TCNNGA | Hpy5004ORF3255P |
| 3255 | M | M.HpyCOL207XIV (100% identity) | TCNNGA | M.Hpy5004ORF3255P |
| 960 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 965 | RM | HpyCOL207ORF3220P (100% identity) | Hpy5004ORF965P | |
| 970 | 828 aa hypothetical protein | |||
| 8595 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyCOL207ORF6670P (92% identity) | Hpy5004ORFBP | |
| 8605 | DNA methylase N-4 | |||
| ??? | hypothetical protein | |||
| 8605 | M | M.HpyCOL207VIII (100% identity) | GANTC | M.Hpy5004ORF8600P |
| 8610 | R | HpyCOL207VIIIP (100% identity) | GANTC | Hpy5004ORF8600P |
| 8615 | peptidase S41 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4115 | M | DNA methyltransferase | M.Hpy5004ORF4115P | |
| 4120 | R | HpyCOL207ORF7570P (100% identity) | Hpy5004ORF4115P | |
| 4125 | rod shape-determining protein MreC | |||
| 380 | R | HpyCOL207ORF7505P (98% identity) | Hpy5004ORF385P | |
| 385 | M | M.HpyCOL207ORF7505P (100% identity) | M.Hpy5004ORF385P | |
| 395 | endonuclease | |||
| 255 | M | M.HpyCOL207ORF6890P (31% identity) | M.Hpy5004ORF255P | |
| 260 | R | HpyCOL208ORF6900P (100% identity) | Hpy5004ORF255P | |
| 265 | 722 aa hypothetical protein | |||
| 6840 | M | M.HpyCOL207ORF7570P (57% identity) | M.Hpy5004ORF6840P | |
| 6845 | type II restriction endonuclease subunit M | |||
| 3350 | ATP-dependent DNA helicase RecG | |||
| 3355 | M | M.HpyCOL207ORF6890P (68% identity) | M.Hpy5004ORF3355P | |