Helicobacter pylori SouthAfrica50 |
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Putative Helicobacter pylori SouthAfrica50 RM systems
Ref: Duncan,S.S. et al. Genome Announc 1 (5), e00729-13 (2013)
REBASE ref # 16653
Contig set: 1,600,214 bp
GenBank #: AVNI00000000 (NZ_AVNI00000000)
REBASE acronym: HpySA50
Org_num: 11560
All begin HPSA50_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 163 | 235 aa hypothetical protein | |||
| ??? | R | HpyCOL305XP (86% identity) | HpySA50ORF166P | |
| 166 | M | M.HpyZ006XI (97% identity) | M.HpySA50ORF166P | |
| 167 | abi-like family protein | |||
| 168 | 63 aa hypothetical protein | |||
| 169 | S | S.HpyL003ORF7815P (53% identity) | S.HpySA50ORF166P | |
| 170 | membrane protein | |||
| 900 | haeIII restriction endonuclease family protein | |||
| 901 | R | type I restriction enzyme R protein | HpySA50ORF901P | |
| 902 | hydroxyethylthiazole kinase | |||
| 975 | cadmium-translocating P-type ATPase | |||
| 976 | S | S.HpyCO7XI (31% identity) | S.HpySA50ORF976P | |
| 977 | 44 aa hypothetical protein | |||
| 1400 | 71 aa hypothetical protein | |||
| ??? | R | HpySA7ORF2206P (95% identity) | HpySA50ORF1405P | |
| 1405 | M | M.HpySA7ORF2206P (96% identity) | M.HpySA50ORF1405P | |
| 1406 | S | S.HpyH003ORF2130P (95% identity) | S.HpySA50ORF1405P | |
| 1408 | polyphosphate kinase 1 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 600 | anti-sigma-28 factor, FlgM family protein | |||
| 601 | M | M.HpySA20ORF1199P (98% identity) | GCGC | M.HpySA50ORF601P |
| 602 | R | HpyZ001XVP (98% identity) | GCGC | HpySA50ORF601P |
| 603 | 144 aa hypothetical protein | |||
| 69 | 366 aa hypothetical protein | |||
| ??? | M | M.HpyZ006ORF7455P (97% identity) | M.HpySA50ORF70P | |
| 72 | integral membrane TerC family protein | |||
| 648 | 201 aa hypothetical protein | |||
| 649 | R | HpyC005XIVP (97% identity) | TCNNGA | HpySA50ORF650P |
| ??? | M | M.HpySP413XI (98% identity) | TCNNGA | M.HpySA50ORF650P |
| 652 | acetyl-CoA carboxylase, biotin carboxylase | |||
| 81 | C-terminal processing peptidase family protein | |||
| ??? | R | HpyNCI57ORFXP (95% identity) | GANTC | HpySA50ORF86P |
| 85 | 57 aa hypothetical protein | |||
| 86 | M | M.HpyKH26ORFUP (97% identity) | GANTC | M.HpySA50ORF86P |
| 87 | 276 aa hypothetical protein | |||
| 86 | DNA methylase family protein | |||
| ??? | RM | HpyI003ORF1205P (82% identity) | HpySA50ORF87P | |
| 89 | nicotinate-nucleotide diphosphorylase | |||
| 130 | YihY family domain protein | |||
| ??? | R | HpyZ009IXP (98% identity) | TGCA | HpySA50ORF134P |
| 134 | M | M.HpyZ001IX (98% identity) | TGCA | M.HpySA50ORF134P |
| 135 | 67 aa hypothetical protein | |||
| 190 | 52 aa hypothetical protein | |||
| 191 | RM | HpyAR6ORF6730P (89% identity) | HpySA50ORF191P | |
| 192 | 227 aa hypothetical protein | |||
| 208 | outer membrane family protein | |||
| ??? | R | HpyZ006ORF6990P (92% identity) | CCATC | HpySA50ORF209P |
| 212 | 304 aa hypothetical protein | |||
| 244 | phosphoribosyl transferase domain protein | |||
| 245 | RM | HpyU416ORF7330P (97% identity) | HpySA50ORF245P | |
| 246 | S | S.HpyZ010ORF7110P (95% identity) | S1.HpySA50ORF245P | |
| 247 | S | S.HpySA7ORF6995AP (85% identity) | S2.HpySA50ORF245P | |
| 248 | 5-3 exonuclease, N-terminal resolvase-like | |||
| 834 | uvrD/REP helicase family protein | |||
| 835 | M | M.HpySA7ORF4415P (97% identity) | GTNNAC | M.HpySA50ORF835P |
| 836 | R | HpyZ007IXP (96% identity) | GTNNAC | HpySA50ORF835P |
| 837 | flagellar hook-basal body s family protein | |||
| 330 | serine O-acetyltransferase | |||
| 331 | R | HpySA7ORF6605P (92% identity) | CATG | HpySA50ORF332P |
| 332 | M | M.HpySA7ORF6605P (98% identity) | CATG | M.HpySA50ORF332P |
| 333 | outer membrane family protein | |||
| 899 | 50 aa hypothetical protein | |||
| 900 | R | HpySA7ORF4125P (83% identity) | GGCC | HpySA50ORF900P |
| 901 | type I restriction enzyme R protein | |||
| 530 | purine nucleoside phosphorylase | |||
| 531 | R | HpyZ007IVP (95% identity) | TCNGA | HpySA50ORF532P |
| 532 | M | M.HpyZ007IV (99% identity) | TCNGA | M.HpySA50ORF532P |
| 533 | 70 aa hypothetical protein | |||
| 1151 | 3-5 exonuclease | |||
| ??? | R | HpyZ001IVP (94% identity) | CCNNGG | HpySA50ORF1155P |
| 1155 | M | M.HpySA20ORF718P (100% identity) | CCNNGG | M.HpySA50ORF1155P |
| 1156 | 3-5 exonuclease | |||
| 1348 | 38 aa hypothetical protein | |||
| ??? | R | Hpy26A1ORF2365P (95% identity) | GTAC | HpySA50ORF1351P |
| 1351 | M | M.Hpy26A1ORF2365P (97% identity) | GTAC | M.HpySA50ORF1351P |
| 1352 | DNA gyrase, B subunit | |||
| 1374 | catalase family protein | |||
| 1375 | M | M.HpyZ006ORF4800P (86% identity) | ACGT | M.HpySA50ORF1375P |
| 1376 | major Facilitator Superfamily protein | |||
| 1380 | glycosyltransferase 9 family protein | |||
| 1381 | M | eco57I restriction-modification methylase family | ATTAAT | M.HpySA50ORF1381P |
| 1382 | outer membrane family protein | |||
| 1617 | clp amino terminal domain protein | |||
| ??? | M | M.HpyZ001III (99% identity) | CCGG | M.HpySA50ORF1618P |
| 1620 | 37 aa hypothetical protein | |||
| ??? | R | hypothetical protein | CCGG | HpySA50ORF1618P |
| 1623 | 204 aa hypothetical protein | |||
| 1623 | 204 aa hypothetical protein | |||
| ??? | M | M.HpyZ007VII (97% identity) | TCGA | M.HpySA50ORF1624P |
| 1626 | exodeoxyribonuclease VII, large subunit | |||
| 1881 | 44 aa hypothetical protein | |||
| 1882 | R | HpyPE116IXP (100% identity) | GTSAC | HpySA50ORF1883P |
| 1883 | M | M.HpyZ009VII (80% identity) | GTSAC | M.HpySA50ORF1883P |
| 1884 | HNH endonuclease family protein | |||
| 1883 | DNA methylase family protein | |||
| 1884 | R | HpySA20ORF56P (42% identity) | CCTC | HpySA50ORF1885P |
| 1885 | M | M2.HpyZ007IIIP (98% identity) | CCTC | M2.HpySA50ORF1885P |
| 1886 | M | M1.HpyZ007III (99% identity) | CCTC | M1.HpySA50ORF1885P |
| 1887 | porphyromonas-type peptidyl-arginine deiminase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 103 | two-component transcriptional regulatory family | |||
| ??? | M | M.HpyK004ORF200P (75% identity) | M.HpySA50ORF104P | |
| 109 | R | HpyZ006ORF7330P (96% identity) | HpySA50ORF104P | |
| 110 | rod shape-determining MreC family protein | |||
| 122 | DNA/RNA non-specific endonuclease family | |||
| ??? | M | M.HpyZ001ORF7575P (95% identity) | M.HpySA50ORF123P | |
| ??? | R | HpyZ006XVIIIP (89% identity) | HpySA50ORF123P | |
| 127 | biotin synthase | |||
| 183 | helicase conserved C-terminal domain protein | |||
| ??? | M | M.HpyCOL303ORF7180P (89% identity) | M.HpySA50ORF184P | |
| ??? | R | HpySA7ORF7260P (96% identity) | HpySA50ORF184P | |
| 190 | 52 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1324 | glutamine synthetase, type I | |||
| 1325 | R | HpyZ006GmrSDP (83% identity) | HpySA50GmrSDP | |
| 1326 | ribosomal protein L9 | |||