Escherichia coli JJ1886 |
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Putative Escherichia coli JJ1886 RM systems
Ref: Andersen,P.S. et al. unpublished
REBASE ref # 16925
| Sequence length: | GenBank #: | |
| Chromosome: | 5,129,938 bp | CP006784 |
| plasmid pJJ1886_5: | 110,040 bp | CP006789 |
REBASE acronym: Eco1886
Org_num: 11422
All begin P423_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1480 | 156 aa hypothetical protein | |||
| 1485 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco1886ORF1490P |
| 1490 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco1886ORF1490P |
| 1495 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco1886ORF1490P |
| 1500 | 252 aa hypothetical protein | |||
| 24690 | endoribonuclease SymE | |||
| 24695 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | Eco1886ORF24705P |
| 24700 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.Eco1886ORF24705P |
| 24705 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.Eco1886ORF24705P |
| 24710 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4960 | 71 aa hypothetical protein | |||
| 4965 | M | M.KpnYN1ORFGP (89% identity) | M.Eco1886ORF4965P | |
| 4970 | DNA-binding protein | |||
| 7195 | 65 aa hypothetical protein | |||
| 7200 | M | M.EcosS9ORF10680P (100% identity) | M.Eco1886ORF7200P | |
| 7215 | pseudogene | |||
| 10645 | multidrug transporter | |||
| 10650 | V | V.SflC32DcmP (74% identity) | V.Eco1886DcmP | |
| 10655 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco1886DcmP |
| 10660 | 231 aa hypothetical protein | |||
| 14450 | holin | |||
| 14455 | M | M.Sso63633ORF22290P (100% identity) | M.Eco1886ORF14455P | |
| 14460 | 67 aa hypothetical protein | |||
| 14490 | LexA family transcriptional regulator | |||
| 14495 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco1886ORF14495P |
| 14500 | 162 aa hypothetical protein | |||
| 14560 | ATPase AAA | |||
| 14565 | M | M.Ecoi64ORF2425P (100% identity) | M.Eco1886ORF14565P | |
| 14570 | carbon starvation induced protein | |||
| 18275 | Fis family transcriptional regulator | |||
| 18280 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco1886ORF18280P |
| 18285 | 59 aa hypothetical protein | |||
| 18875 | ribulose-phosphate 3-epimerase | |||
| 18880 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco1886DamP |
| 18885 | cell division protein DamX | |||
| 24335 | transposase | |||
| ??? | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.Eco1886ORF24340P |
| 24345 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco1886ORF24340P |
| 24350 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco1886ORF24340P |
| 24355 | restriction endonuclease | |||
| plasmid pJJ1886_5 | ||||
| 25635 | chromosome partitioning protein ParB | |||
| 25640 | M | M.UbapRSB107ORFAP (100% identity) | M.Eco1886ORF25640P | |
| 25645 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24350 | type II restriction endonuclease | |||
| 24355 | R | EcosS9McrCP (100% identity) | Eco1886McrCP | |
| 24360 | R | EcosS3McrBP (100% identity) | Eco1886McrBP | |
| 24365 | glycosyl transferase | |||