Helicobacter pylori 26695-1CL |
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Putative Helicobacter pylori 26695-1CL RM systems
Ref: Yamaoka,Y. et al. unpublished
REBASE ref # 16571
Complete sequence: 1,667,239 bp
GenBank #: AP013356
REBASE acronym: HpyA1CL
Org_num: 11339
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.HpyS299ORF3810P (100% identity) | S.HpyA1CLORFVP | |
| ??? | M | M.HpyS299ORF3810P (100% identity) | M.HpyA1CLORFVP | |
| ??? | R | HpyS299ORF3810P (100% identity) | HpyA1CLORFVP | |
| ??? | S | S.HpyS299IV (100% identity) | CTANNNNNNNNTGT | S.HpyA1CLORFOP |
| ??? | R | HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | HpyA1CLORFNP |
| ??? | S | S.HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | S.HpyA1CLORFNP |
| ??? | M | M.HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | M.HpyA1CLORFNP |
| ??? | R | HpyS299ORF7180P (100% identity) | HpyA1CLORFEP | |
| ??? | M | M.HpyS299ORF7180P (100% identity) | M.HpyA1CLORFEP | |
| ??? | S | S.HpyRif2ORF7260P (100% identity) | S.HpyA1CLORFEP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M2.HpyS299IIIP (100% identity) | CCTC | M1.HpyA1CLORFA1P |
| ??? | M | M1.HpyS299III (100% identity) | CCTC | M2.HpyA1CLORFA1P |
| ??? | R | HpyRif1ORF230P (100% identity) | CCTC | HpyA1CLORFA1P |
| ??? | 419 aa hypothetical protein | |||
| ??? | HNH endonuclease | |||
| ??? | R | HpyS299VIIIP (100% identity) | CCTTC | HpyA1CLORFB1P |
| ??? | M | M.HpyS299VIII (100% identity) | CCTTC | M.HpyA1CLORFB1P |
| ??? | R | HpyS299VP (100% identity) | GATC | HpyA1CLORFZP |
| ??? | M | M.HpyS299V (100% identity) | GATC | M.HpyA1CLORFZP |
| ??? | site-specific DNA-methyltransferase | |||
| ??? | R | HpyS299ORF4845P (100% identity) | CCGG | HpyA1CLORFYP |
| ??? | M | M.HpyS299ORF4845P (100% identity) | CCGG | M.HpyA1CLORFYP |
| ??? | M | M.HpyS299VII (100% identity) | TCGA | M.HpyA1CLORFXP |
| ??? | type II DNA modification enzyme | |||
| ??? | R | HpyRif2ORF1870P (100% identity) | TCNNGA | HpyA1CLORFWP |
| ??? | M | M.HpyS299ORF4305P (100% identity) | TCNNGA | M.HpyA1CLORFWP |
| ??? | M | M.HpyS299II (100% identity) | ATTAAT | M.HpyA1CLORFSP |
| ??? | glycosyltransferase 9 family protein | |||
| ??? | glycosyltransferase 9 family protein | |||
| ??? | M | M.HpyRif2ORFEP (100% identity) | ACNGT | M.HpyA1CLORFTP |
| ??? | R | HpyRif2ORFEP (100% identity) | ACNGT | HpyA1CLORFTP |
| ??? | DNA -methyltransferase | |||
| ??? | 170 aa hypothetical protein | |||
| ??? | M | M.HpyS299ORF3700P (94% identity) | ACGT | M.HpyA1CLORFUP |
| ??? | R | HpyS299ORF3700P (100% identity) | ACGT | HpyA1CLORFUP |
| ??? | M | M.HpyRif2ORFDP (100% identity) | GTAC | M.HpyA1CLORFRP |
| ??? | R | HpyRif2ORFDP (100% identity) | GTAC | HpyA1CLORFRP |
| ??? | RM | HpyRif2ORFGP (100% identity) | HpyA1CLORFPP | |
| ??? | R | HpyS299ORF1570P (100% identity) | GTNNAC | HpyA1CLORFMP |
| ??? | M | M.HpyRif2ORF4690P (100% identity) | GTNNAC | M.HpyA1CLORFMP |
| ??? | M | M.HpyS299ORF435P (100% identity) | GCGC | M.HpyA1CLORFLP |
| ??? | M | M.HpyS299I (100% identity) | CATG | M.HpyA1CLORFKP |
| ??? | R | HpyRif2ORF6260P (100% identity) | CATG | HpyA1CLORFKP |
| ??? | R | HpyS299ORF8615P (100% identity) | GANTC | HpyA1CLORFIP |
| ??? | M | M.HpyS299ORF8665P (100% identity) | GANTC | M.HpyA1CLORFIP |
| ??? | Type IIG R-M system | |||
| ??? | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyRif2ORF6990P (100% identity) | HpyA1CLORFJP | |
| ??? | R | HpyS299ORF7360P (100% identity) | GAAGA | HpyA1CLORFGP |
| ??? | M | M2.HpyS299ORF7360P (100% identity) | GAAGA | M1.HpyA1CLORFGP |
| ??? | M | M2.HpySWT04XIII (100% identity) | GAAGA | M2.HpyA1CLORFGP |
| ??? | site-specific DNA-methyltransferase | |||
| ??? | S | S.HpyA1ORFDP (100% identity) | S.HpyA1CLORFDP | |
| ??? | RM | HpyS299ORF6805P (100% identity) | HpyA1CLORFDP | |
| ??? | RM | HpyRif2ORFAP (100% identity) | GCGTA | HpyA1CLORFBP |
| ??? | RM | HpyRif2ORFAP (100% identity) | GCGTA | HpyA1CLORFC1P |
| ??? | M | M.HpyRif2ORF7965P (100% identity) | TGCA | M.HpyA1CLORFAP |
| ??? | R | HpyS299ORF6490P (100% identity) | TGCA | HpyA1CLORFAP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyS299VIP (97% identity) | GCAG | HpyA1CLORFQP |
| ??? | M | M.HpyS299VI (100% identity) | GCAG | M.HpyA1CLORFQP |
| ??? | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyRif2ORF7075P (100% identity) | TCAG | M.HpyA1CLORFHP |
| ??? | R | HpyS299ORF7350P (100% identity) | TCAG | HpyA1CLORFHP |
| ??? | R | HpyS299ORF6570P (100% identity) | HpyA1CLORFCP | |
| ??? | M | M.HpyRif2ORFBP (100% identity) | M.HpyA1CLORFCP | |