Helicobacter pylori SouthAfrica20 |
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Putative Helicobacter pylori SouthAfrica20 RM systems
Ref: Duncan,S.S. et al. unpublished
REBASE ref # 16653
Complete sequence: 1,622,903 bp
GenBank #: CP006691
REBASE acronym: HpySA20
Org_num: 11153
All begin HPSA20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 485 | polyphosphate kinase 1 | |||
| 487 | S | S.HpyCO6XII (95% identity) | S.HpySA20ORF488P | |
| 488 | M | M.HpyZ006XII (97% identity) | M.HpySA20ORF488P | |
| ??? | R | Hpy26A1ORF2170P (92% identity) | HpySA20ORF488P | |
| 492 | 631 aa hypothetical protein | |||
| 834 | outer membrane family protein | |||
| ??? | S | S.HpyU306IX (90% identity) | S.HpySA20ORF835P | |
| 837 | cadmium-translocating P-type ATPase | |||
| 897 | hydroxyethylthiazole kinase | |||
| 898 | R | HpyZ009ORF4050P (95% identity) | HpySA20ORF901P | |
| ??? | S | S.Hpyoh1ORF5270P (95% identity) | S.HpySA20ORF901P | |
| 901 | M | type I restriction-modification system, M | M.HpySA20ORF901P | |
| 902 | PAP2 superfamily protein | |||
| 1607 | 43 aa hypothetical protein | |||
| 1608 | S | S.HpyZ008XI (95% identity) | S.HpySA20ORF1609P | |
| 1609 | M | M.HpySP409XIV (95% identity) | M.HpySA20ORF1609P | |
| 1610 | R | HpyZ008ORF7040P (96% identity) | HpySA20ORF1609P | |
| 1611 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | porphyromonas-type peptidyl-arginine deiminase | |||
| 56 | M | M1.HpySA50ORF1885P (98% identity) | CCTC | M1.HpySA20ORF56P |
| ??? | M | M2.Hpy26A1ORF265P (98% identity) | CCTC | M2.HpySA20ORF56P |
| ??? | R | HpyZ001XIVP (48% identity) | CCTC | HpySA20ORF56P |
| 62 | 57 aa hypothetical protein | |||
| 59 | HNH endonuclease family protein | |||
| 60 | R | HpySA20ORF56P (34% identity) | CCTTC | HpySA20ORF62P |
| 61 | hypothetical protein | |||
| 62 | M | 57 aa hypothetical protein | CCTTC | M1.HpySA20ORF62P |
| 63 | M | M.HpyZ001XIV (91% identity) | CCTTC | M2.HpySA20ORF62P |
| 64 | sodium/proline symporter | |||
| 106 | 335 aa hypothetical protein | |||
| 107 | M | M.HpyZ006XIII (97% identity) | GATC | M.HpySA20ORF107P |
| 108 | glycosyl transferase 11 family protein | |||
| 287 | exodeoxyribonuclease VII, large subunit | |||
| 288 | M | M.HpyZ007VII (95% identity) | TCGA | M.HpySA20ORF288P |
| 289 | 204 aa hypothetical protein | |||
| 289 | 204 aa hypothetical protein | |||
| 290 | R | HpyZ001IIIP (95% identity) | CCGG | HpySA20ORF291P |
| ??? | M | M.HpyZ009III (99% identity) | CCGG | M.HpySA20ORF291P |
| 293 | clp amino terminal domain protein | |||
| 508 | GTP-binding protein TypA/BipA | |||
| 509 | M | M.HpyZ001II (100% identity) | ACNGT | M.HpySA20ORF509P |
| 510 | R | HpyZ001IIP (100% identity) | ACNGT | HpySA20ORF509P |
| 511 | major Facilitator Superfamily protein | |||
| 512 | 86 aa hypothetical protein | |||
| 513 | M | M.HpyZ009ORF2275P (98% identity) | ACGT | M.HpySA20ORF513P |
| 514 | R | HpySA7ORF2320P (77% identity) | ACGT | HpySA20ORF513P |
| 515 | 52 aa hypothetical protein | |||
| 534 | DNA gyrase, B subunit | |||
| 535 | M | M.HpyZ001XII (99% identity) | GTAC | M.HpySA20ORF535P |
| ??? | R | HpyZ001XIIP (92% identity) | GTAC | HpySA20ORF535P |
| 538 | 38 aa hypothetical protein | |||
| 695 | 4Fe-4S dicluster domain protein | |||
| ??? | RM | HpyZ001ORF2405P (92% identity) | HpySA20ORF696P | |
| 698 | 439 aa hypothetical protein | |||
| 717 | 3-5 exonuclease | |||
| 718 | M | M.HpySA50ORF1155P (100% identity) | CCNNGG | M.HpySA20ORF718P |
| ??? | R | HpyZ001IVP (98% identity) | CCNNGG | HpySA20ORF718P |
| 720 | 3-5 exonuclease | |||
| 960 | flagellar hook-basal body s family protein | |||
| ??? | R | HpyC126ORF4415P (90% identity) | GTNNAC | HpySA20ORF963P |
| ??? | M | M.HpyZ001XIII (95% identity) | GTNNAC | M.HpySA20ORF963P |
| 965 | uvrD/REP helicase family protein | |||
| 1152 | acetyl-CoA carboxylase, biotin carboxylase | |||
| 1153 | M | M.HpyZ006IX (99% identity) | TCNNGA | M.HpySA20ORF1153P |
| 1154 | R | HpyZ001VIIIP (88% identity) | TCNNGA | HpySA20ORF1153P |
| 1155 | 201 aa hypothetical protein | |||
| 1197 | 144 aa hypothetical protein | |||
| 1198 | R | HpyZ001XVP (100% identity) | GCGC | HpySA20ORF1199P |
| 1199 | M | M.HpyZ001XV (99% identity) | GCGC | M.HpySA20ORF1199P |
| 1200 | anti-sigma-28 factor, FlgM family protein | |||
| 1449 | 52 aa hypothetical protein | |||
| 1450 | M | M.HpySA50ORF332P (98% identity) | CATG | M.HpySA20ORF1450P |
| 1451 | membrane protein | |||
| 1513 | membrane protein | |||
| 1514 | R | alwI restriction endonuclease family protein | CCATC | HpySA20ORF1514P |
| 1515 | 52 aa hypothetical protein | |||
| 1533 | DNA polymerase I family protein | |||
| ??? | S | S.HpyPOR111ORF7545P (59% identity) | S.HpySA20ORF1536P | |
| 1536 | RM | HpyZ007ORF6735P (98% identity) | HpySA20ORF1536P | |
| 1537 | phosphoribosyl transferase domain protein | |||
| 1564 | 88 aa hypothetical protein | |||
| 1565 | R | HpyH015VIP (81% identity) | CCATC | HpySA20ORF1565P |
| 1566 | outer membrane family protein | |||
| 1586 | 80 aa hypothetical protein | |||
| 1587 | RM | eco57I restriction-modification methylase family | HpySA20ORF1587P | |
| 1588 | 95 aa hypothetical protein | |||
| 1631 | 67 aa hypothetical protein | |||
| 1632 | M | M.HpyZ001IX (98% identity) | TGCA | M.HpySA20ORF1632P |
| 1633 | R | HpySA50ORF134P (98% identity) | TGCA | HpySA20ORF1632P |
| 1634 | YihY family domain protein | |||
| 1650 | DNA methylase family protein | |||
| 1651 | M | M1.HpyZ006V (99% identity) | GAAGA | M1.HpySA20ORF1651P |
| 1652 | M | M1.HpySP703ORF6470P (81% identity) | GAAGA | M2.HpySA20ORF1651P |
| 1653 | R | Hpy26A1ORF7045P (68% identity) | GAAGA | HpySA20ORF1651P |
| 1654 | two-component transcriptional regulatory family | |||
| 1665 | nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyZ001ORF7710P (83% identity) | GANTC | HpySA20ORF1666P |
| 1669 | 60 aa hypothetical protein | |||
| 1679 | integral membrane TerC family protein | |||
| 1680 | M | M.HpyZ007ORF7485P (99% identity) | CGCG | M.HpySA20ORF1680P |
| 1681 | R | HpyZ007ORF7485P (96% identity) | CGCG | HpySA20ORF1680P |
| ??? | site-specific DNA-methyltransferase | |||
| 1681 | 204 aa hypothetical protein | |||
| ??? | M | M.HpySA7ORF7860P (98% identity) | M.HpySA20ORF1682P | |
| 1684 | 366 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1588 | 95 aa hypothetical protein | |||
| ??? | R | HpySA7ORF7260P (97% identity) | HpySA20ORF1593P | |
| ??? | M | M.HpySA7ORF7260P (95% identity) | M.HpySA20ORF1593P | |
| 1595 | DEAD/DEAH box helicase family protein | |||
| 1635 | biotin synthase | |||
| ??? | R | HpySA7ORF7470P (94% identity) | HpySA20ORF1638P | |
| 1638 | M | M.HpyC005ORF7490P (90% identity) | M.HpySA20ORF1638P | |
| 1639 | DNA/RNA non-specific endonuclease family | |||
| 1648 | rod shape-determining MreC family protein | |||
| 1649 | R | Hpy26A1ORF7040P (94% identity) | HpySA20ORF1650P | |
| 1650 | M | M.HpyZ008ORF6320P (93% identity) | M.HpySA20ORF1650P | |
| 1651 | DNA methylase family protein | |||