Lactobacillus casei subsp. casei ATCC 393 |
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Putative Lactobacillus casei subsp. casei ATCC 393 RM systems
Ref: Toh,H. et al. PLoS ONE (2013) In press
REBASE ref # 16333
Complete sequence: 2,924,929 bp
GenBank #: AP012544
REBASE acronym: Lca393
Org_num: 11121
All begin LBCZ_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2619 | transposase | |||
| 2620 | S | S.Lsp2752ORFAP (57% identity) | S.Lca393ORF2620P | |
| 2621 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1864 | 839 aa conserved hypothetical protein | |||
| 1865 | M | M.Lca470ORF5965P (100% identity) | M.Lca393ORF1865P | |
| 1866 | phage integrase | |||
| 1866 | phage integrase | |||
| 1867 | RM | Lca470ORF5975P (100% identity) | Lca393ORF1867P | |
| 1868 | 1214 aa conserved hypothetical protein | |||
| 2227 | 145 aa conserved hypothetical protein | |||
| ??? | M | M.LcaLC130ORF11655P (100% identity) | CTSAG | M.Lca393ORF2228P |
| 2229 | 73 aa conserved hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2239 | 347 aa conserved hypothetical protein | |||
| 2240 | R | Lze113ORF3000P (100% identity) | Lca393ORF2241P | |
| 2241 | M | M.Lze113ORF3000P (100% identity) | M.Lca393ORF2241P | |
| 2242 | 234 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1861 | transcriptional regulator | |||
| 1862 | R | LcaLC130MrrP (100% identity) | Lca393MrrP | |
| 1863 | 687 aa conserved hypothetical protein | |||