Citrobacter freundii |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Citrobacter freundii RM systems
Ref: Golebiewski,M. et al. unpublished
REBASE ref # 7954
| Sequence length: | GenBank #: | |
| chromosome 1: | 5,172,644 bp | LS992175 |
| chromosome 1: | 5,009,078 bp | LS992183 |
| chromosome main: | 5,085,387 bp | OW969904 |
| plasmid 1: | 40,186 bp | LT992437 |
| plasmid 2: | 159,493 bp | LS992176 |
| plasmid 2: | 185,156 bp | LS992184 |
| plasmid 3: | 71,403 bp | LS992177 |
| plasmid P1: | 191,011 bp | OW969905 |
| plasmid P2: | 43,157 bp | OW969906 |
REBASE acronym: CfrSC21
Org_num: 28410
All begin AI3057V1_, AI3057V1_REPA, CF12SC21KPC_, CFE2614_, CFU2785_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 757 | Uncharacterised protein | |||
| 758 | M | M.Sen80013ORF6310P (100% identity) | M.Cfr2785ORF758P | |
| 759 | Uncharacterised protein | |||
| 760 | S | S.Sen80013ORF6310P (100% identity) | S.Cfr2785ORF758P | |
| 761 | Uncharacterised protein | |||
| 762 | R | Sen80013ORF6310P (100% identity) | Cfr2785ORF758P | |
| 763 | Uncharacterised protein | |||
| 4238 | Uncharacterised protein | |||
| 4239 | R | CfrS1ORF21920P (100% identity) | Cfr2785ORF4240P | |
| 4240 | M | M.CfrZS47ORF21595P (100% identity) | M.Cfr2785ORF4240P | |
| 4241 | S | S.CfrZS47ORF21595P (100% identity) | S.Cfr2785ORF4240P | |
| 4242 | Thymidylate synthase 1 | |||
| chromosome main | ||||
| 746 | 260 aa hypothetical protein | |||
| 747 | R | CfrSK3ORF3795P (99% identity) | Cfri0ORF748P | |
| 748 | M | M.CfrSK3ORF3795P (96% identity) | M.Cfri0ORF748P | |
| 749 | S | S.Eco7607ORFGP (60% identity) | S.Cfri0ORF748P | |
| 750 | 153 aa hypothetical protein | |||
| 4428 | 621 aa hypothetical protein | |||
| 4429 | M | M.EcoF719ORF7800P (100% identity) | M.Cfri0ORF4429P | |
| 4430 | S | S.Ero374ORF20100P (66% identity) | S.Cfri0ORF4429P | |
| 4431 | R | Eco3C16ORF3535P (99% identity) | Cfri0ORF4429P | |
| 4432 | 112 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 369 | cell division protein DamX | |||
| 370 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfi2614DamP |
| 371 | Ribulose-phosphate 3-epimerase | |||
| 480 | Uncharacterised protein | |||
| 481 | M | M.Eco5172ORF4078P (100% identity) | ATGCAT | M.Cfi2614ORF481P |
| 482 | Prophage CP4-57 integrase | |||
| 1353 | Uncharacterised protein | |||
| 1354 | M | M.CbrCB04ORF14280P (96% identity) | M.Cfi2614ORF1354P | |
| 1355 | Uncharacterised protein | |||
| 2006 | hydrolase | |||
| ??? | M | M.CspSL156ORF9755P (100% identity) | CCWGG | M.Cfi2614ORF2007P |
| 2008 | V | V.CyoL6ORF9385P (100% identity) | V.Cfi2614ORF2007P | |
| 2009 | inner membrane transporter YedA | |||
| 2117 | Uncharacterised protein | |||
| 2118 | M | M.CspSL156ORF10315P (100% identity) | M.Cfi2614ORF2118P | |
| 2119 | Uncharacterised protein | |||
| 4134 | Uncharacterised protein | |||
| 4135 | M | M.Cfri22ORF3933P (100% identity) | M.Cfi2614ORF4135P | |
| 4136 | Uncharacterised protein | |||
| chromosome 1 | ||||
| 430 | cell division protein DamX | |||
| 431 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfr2785DamP |
| 432 | Ribulose-phosphate 3-epimerase | |||
| 541 | Uncharacterised protein | |||
| 542 | M | M.CfrZS47ORF2675P (100% identity) | ATGCAT | M.Cfr2785ORF542P |
| 543 | Hin recombinational enhancer-binding protein | |||
| 1499 | Uncharacterised protein | |||
| 1500 | M | M.CfrZS47ORF7815P (100% identity) | M.Cfr2785ORF1500P | |
| 1501 | Uncharacterised protein | |||
| 1944 | hydrolase | |||
| 1945 | M | M.CfrZS47ORF10210P (97% identity) | CCWGG | M.Cfr2785ORF1945P |
| 1946 | V | V.CfrZS47ORF10210P (100% identity) | V.Cfr2785ORF1945P | |
| 1947 | inner membrane transporter YedA | |||
| 2796 | Uncharacterised protein | |||
| 2797 | M | M.CfrZS47ORF14380P (100% identity) | M.Cfr2785ORF2797P | |
| 2798 | Uncharacterised protein | |||
| 3249 | Uncharacterised protein | |||
| 3250 | M | M.CfrZS47ORF16765P (100% identity) | M.Cfr2785ORF3250P | |
| 3251 | Uncharacterised protein | |||
| 4430 | PglZ domain protein | |||
| 4431 | RM | Kpn024ORFFBP (100% identity) | Cfr2785ORF4431BP | |
| 4432 | Uncharacterised protein | |||
| 4433 | RM | Spu12093ORF4120AP (80% identity) | Cfr2785ORF4431AP | |
| 4434 | Uncharacterised protein | |||
| 4531 | Uncharacterised protein | |||
| 4532 | M | M.CfrZS47ORF23465P (99% identity) | M.Cfr2785ORF4532P | |
| 4533 | Crossover junction endodeoxyribonuclease RusA | |||
| chromosome main | ||||
| 317 | Cell division protein DamX | |||
| 318 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfri0DamP |
| 319 | Ribulose-phosphate 3-epimerase | |||
| 419 | 54 aa hypothetical protein | |||
| 420 | M | M.CspLUTT5ORF2195P (100% identity) | ATGCAT | M.Cfri0ORF420P |
| 421 | DNA-binding protein Fis | |||
| 1153 | 115 aa hypothetical protein | |||
| 1154 | M | M.EhoEhh24ORF24435P (100% identity) | M.Cfri0ORF1154P | |
| 1155 | 73 aa hypothetical protein | |||
| 1443 | 53 aa hypothetical protein | |||
| 1444 | M | M.Cfr370ORF6320P (96% identity) | M.Cfri0ORF1444P | |
| 1445 | 192 aa hypothetical protein | |||
| 1863 | 230 aa hypothetical protein | |||
| 1864 | M | M.Cfri8ORF1925P (100% identity) | CCWGG | M.Cfri0ORF1864P |
| 1865 | V | V.CyoL6ORF9385P (100% identity) | V.Cfri0ORF1864P | |
| 1866 | inner membrane transporter YedA | |||
| 3027 | 188 aa hypothetical protein | |||
| 3028 | M | M.Ero872ORF2395P (99% identity) | M.Cfri0ORF3028P | |
| 3029 | 143 aa hypothetical protein | |||
| 3309 | 70 aa hypothetical protein | |||
| 3310 | M | M.Cpo163ORF22740P (100% identity) | M.Cfri0ORF3310P | |
| 3311 | 109 aa hypothetical protein | |||
| 4247 | Toxic protein SymE | |||
| 4248 | R | CfrZS47ORF21490P (98% identity) | Cfri0ORF4248P | |
| 4249 | 265 aa hypothetical protein | |||
| plasmid 1 | ||||
| 47 | 190 aa hypothetical protein | |||
| 48 | R | Sma31ORF25925P (96% identity) | CfrSC21ORF48P | |
| 49 | 82 aa hypothetical protein | |||
| plasmid 2 | ||||
| 5161 | cobalt transporter ATP-binding subunit | |||
| 5162 | M | M.SmaBWH35ORF16650P (100% identity) | CCWGG | M.Cfi2614ORF5162P |
| 5163 | R | SmaBWH35ORF16650P (100% identity) | CCWGG | Cfi2614ORF5162P |
| 5164 | Site-specific recombinase XerD | |||
| 5169 | Uncharacterised protein | |||
| 5170 | M | M.Kpni11ayORF5166P (100% identity) | M.Cfi2614ORF5170P | |
| 5171 | Uncharacterised protein | |||
| plasmid 2 | ||||
| 5175 | Uncharacterised protein | |||
| 5176 | M | M.Xca80ORFEP (100% identity) | M.Cfr2785ORF5176P | |
| 5177 | PRTRC system protein D | |||
| plasmid 3 | ||||
| 5350 | IS1 transposase | |||
| 5351 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Cfi2614ORF5351P |
| 5352 | R | YpsR1ORFAP (99% identity) | CCWGG | Cfi2614ORF5351P |
| 5353 | Integrase core domain protein | |||
| plasmid P1 | ||||
| 4950 | DNA polymerase III subunit beta | |||
| 4951 | M | M.Sen3039ORF24445P (100% identity) | GATC | M.Cfri0ORF4951P |
| 4952 | 76 aa hypothetical protein | |||
| plasmid P2 | ||||
| 5141 | 190 aa hypothetical protein | |||
| 5142 | R | Sma31ORF25925P (96% identity) | CTCGAG | Cfri0ORF5142P |
| 5143 | 82 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 634 | 30 aa hypothetical protein | |||
| 635 | R | EgeA4ORF9240P (97% identity) | Cfri0ORF636P | |
| 636 | M | M.EgeA4ORF9240P (99% identity) | M.Cfri0ORF636P | |
| 637 | 900 aa hypothetical protein | |||
| 66 | 73 aa hypothetical protein NF29_01680 | |||
| 4270 | M | M.KpaCM1ORF24780P (100% identity) | M.Cfri0ORF4270P | |
| 4271 | R | Kmi375ORF4337P (100% identity) | Cfri0ORF4270P | |
| 4272 | ATP-dependent DNA helicase PcrA | |||
| plasmid P1 | ||||
| 4968 | 164 aa hypothetical protein | |||
| 4969 | R | Kqu2018ORF4320P (100% identity) | Cfri0ORF4969P | |
| 4970 | 128 aa hypothetical protein | |||