Helicobacter pylori UM298 |
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Putative Helicobacter pylori UM298 RM systems
Ref: Loke,M.F. unpublished
REBASE ref # 16472
Complete sequence: 1,594,544 bp
GenBank #: CP006610
REBASE acronym: Hpy298
Org_num: 10696
All begin K748_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1825 | 631 aa hypothetical protein | |||
| ??? | R | HpyUM032XVIP (100% identity) | CCANNNNNNTC | Hpy298ORF1845P |
| 1845 | M | M.HpyUM032XVI (100% identity) | CCANNNNNNTC | M.Hpy298ORF1845P |
| 1850 | S | S.HpyUM032XVI (100% identity) | CCANNNNNNTC | S.Hpy298ORF1845P |
| 1860 | polyphosphate kinase | |||
| 4655 | type I restriction enzyme R protein HsdR | |||
| 8335 | R | HpyUM032XIIP (100% identity) | CRTANNNNNNNTC | Hpy298ORF4660P |
| 4660 | M | M.HpyUM032XII (100% identity) | CRTANNNNNNNTC | M.Hpy298ORF4660P |
| 4665 | S | S.HpyUM032XII (100% identity) | CRTANNNNNNNTC | S.Hpy298ORF4660P |
| 4680 | FAD-dependent thymidylate synthase | |||
| 1220 | 60 aa hypothetical protein | |||
| ??? | S | S.Hpybs3ORFUP (35% identity) | CRTANNNNNNNTC | S.Hpy298ORF1225P |
| 1230 | cadmium transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1730 | 61 aa hypothetical protein | |||
| 1735 | R | HpyUM032ORF11004P (100% identity) | ACGT | Hpy298ORF1740P |
| 1740 | M | M.HpyUM032ORF11004P (100% identity) | ACGT | M.Hpy298ORF1740P |
| 1745 | restriction endonuclease | |||
| 1740 | DNA methyltransferase | |||
| 1745 | R | HpyUM032IIP (100% identity) | ACNGT | Hpy298IIP |
| 1750 | M | M.HpyUM032II (100% identity) | ACNGT | M.Hpy298II |
| 1755 | GTP-binding protein | |||
| 1760 | glycosyltransferase 9 family protein | |||
| 1765 | M | M.HpyUM032VII (100% identity) | ATTAAT | M.Hpy298VI |
| 1770 | membrane protein | |||
| 2755 | chaperone protein ClpB | |||
| 2760 | M | M.HpyUM032IX (100% identity) | CCGG | M.Hpy298V |
| 2765 | R | HpyUM032IXP (100% identity) | CCGG | Hpy298VP |
| 2770 | 204 aa hypothetical protein | |||
| 2770 | 204 aa hypothetical protein | |||
| ??? | M | M.HpyUM032XVII (100% identity) | TCGA | M.Hpy298ORF2775P |
| 2780 | exodeoxyribonuclease VII large subunit | |||
| 3505 | malonyl CoA-ACP transacylase | |||
| 3515 | R | HpyUM032IIIP (100% identity) | GATC | Hpy298IIIP |
| 3520 | M | M.HpyUM032III (100% identity) | GATC | M.Hpy298III |
| 3525 | alpha-1,2-fucosyltransferase | |||
| 3920 | proline:sodium symporter PutP | |||
| 3925 | M | M2.HpyUM032VIP (100% identity) | CCTC | M2.Hpy298VIIP |
| 3930 | M | M1.HpyUM032VI (100% identity) | CCTC | M1.Hpy298VII |
| 3935 | non-functional type II restriction endonuclease | |||
| 3980 | DNA methyltransferase | |||
| 3985 | R | HpyUM032IVP (100% identity) | GANTC | Hpy298IVP |
| 3990 | M | M.HpyUM032IV (100% identity) | GANTC | M.Hpy298IV |
| 3995 | DNA methyltransferase | |||
| 3995 | DNA methyltransferase | |||
| 4000 | RM | HpyUM032ORF8780P (100% identity) | Hpy298ORF4000P | |
| 4005 | nicotinate-nucleotide pyrophosphorylase | |||
| 8315 | 107 aa hypothetical protein | |||
| 4545 | R | HpyUM032VIIIP (100% identity) | TGCA | Hpy298VIIIP |
| 4550 | M | M.HpyUM032VIII (100% identity) | TGCA | M.Hpy298VIII |
| 4555 | 67 aa hypothetical protein | |||
| 4745 | DEAD/DEAH box helicase | |||
| ??? | RM | Hpy299ORF6360P (100% identity) | Hpy298ORF4750P | |
| 4755 | transcription elongation factor NusA | |||
| 4820 | membrane protein | |||
| 8345 | R | HpyUM032XP (100% identity) | CCATC | Hpy298XP |
| ??? | M | M2.HpyUM032XP (100% identity) | CCATC | M2.Hpy298X |
| 4835 | M | M1.HpyUM032X (100% identity) | CCATC | M1.Hpy298X |
| 4840 | permease | |||
| 4965 | amidophosphoribosyltransferase | |||
| 4970 | RM | HpyUM032XIII-mut1 (100% identity) | CYANNNNNNNTRG | Hpy298XI |
| 4975 | S | S.HpyUM032XIII-mut1 (52% identity) | CYANNNNNNNTRG | S1.Hpy298XI |
| 4980 | S | S2.HpyUM032XIII (100% identity) | CYANNNNNNNTRG | S2.Hpy298XI |
| 4985 | DNA polymerase I | |||
| 6165 | serine acetyltransferase | |||
| 6170 | R | HpyUM032IP (100% identity) | CATG | Hpy298IP |
| 6175 | M | M.HpyUM032I (100% identity) | CATG | M.Hpy298I |
| 6180 | hydrolase | |||
| 6360 | purine nucleoside phosphorylase | |||
| 6365 | R | HpyUM032VP (100% identity) | TCNGA | Hpy298IXP |
| 6370 | M | M.HpyUM032V (100% identity) | TCNGA | M.Hpy298IX |
| 6375 | 76 aa hypothetical protein | |||
| 6860 | Laminin subunit alpha-2 precursor | |||
| 6865 | R | HpyUM032ORF5620P (100% identity) | TCNNGA | Hpy298ORF6870P |
| 8440 | M | M.HpyUM032ORF5620P (100% identity) | TCNNGA | M.Hpy298ORF6870P |
| 6875 | acetyl-CoA carboxylase | |||
| 7610 | ATP-dependent DNA helicase | |||
| 7615 | M | M.HpyUM032XI (100% identity) | GTNNAC | M.Hpy298ORF7615P |
| 7620 | R | HpyUM032XIP (100% identity) | GTNNAC | Hpy298ORF7615P |
| 7625 | flagellar hook protein FlgE | |||
| 7825 | DNA gyrase subunit B | |||
| ??? | M | M.Hpy299ORF1220P (100% identity) | GTAC | M.Hpy298ORF7830P |
| 7835 | R | HpyUM032ORF6575P (100% identity) | GTAC | Hpy298ORF7830P |
| 7840 | membrane protein | |||
| 545 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyUM032ORF7440AP (100% identity) | Hpy298ORF550AP | |
| 550 | RM | HpyUM032ORF7440BP (100% identity) | Hpy298ORF550BP | |
| 555 | membrane protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4055 | chemotaxis protein CheY | |||
| ??? | M | M.HpyUM032ORF8715P (100% identity) | M.Hpy298ORF4065P | |
| 4075 | R | HpyUM032ORF8715P (100% identity) | Hpy298ORF4065P | |
| 4080 | rod shape-determining protein MreC | |||
| 4730 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyUM032ORF3575P (100% identity) | M.Hpy298ORF4735P | |
| 4745 | R | HpyUM032ORF3575P (100% identity) | Hpy298ORF4735P | |
| 4750 | pseudogene | |||