Salmonella enterica subsp. enterica serovar Heidelberg 41578 |
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Putative Salmonella enterica subsp. enterica serovar Heidelberg 41578 RM systems
Ref: Hoffman,M. et al. unpublished
REBASE ref # 16182
| Sequence length: | GenBank #: | |
| Chromosome: | 4,793,479 bp | CP004086 |
| plasmid pSEEH1578_01: | 117,929 bp | CP004087 |
REBASE acronym: Sen318
Org_num: 11266
All begin SEEH1578_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8670 | endoribonuclease SymE | |||
| 8675 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen318I |
| 8680 | M | M.Sens12373ORF19415P (100% identity) | GAGNNNNNNRTAYG | M.Sen318I |
| 8685 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen318IP |
| 8690 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3025 | global DNA-binding transcriptional dual | |||
| 3030 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen318III |
| 3035 | 54 aa hypothetical protein | |||
| 3495 | ribulose-phosphate 3-epimerase | |||
| 3500 | M | M.StyTDamP (100% identity) | GATC | M.Sen318DamP |
| 3505 | cell division protein DamX | |||
| 8515 | ATP-dependent helicase | |||
| 8520 | RM | Sens12373ORF19575P (100% identity) | GATCAG | Sen318ORFEP |
| 14240 | Bacteriophage protein | |||
| 14245 | M | M.Sens12373ORF14090P (100% identity) | GATC | M.Sen318IV |
| 14250 | Integration, recombination (Phage or Prophage) | |||
| 19220 | DMT superfamily transporter inner membrane | |||
| 19225 | V | V.StyTDcmP (100% identity) | V.Sen318DcmP | |
| 19230 | M | M.SenZ223DcmP (100% identity) | CCWGG | M.Sen318DcmP |
| 19235 | hydrolase | |||
| plasmid pSEEH1578_01 | ||||
| 275 | 73 aa hypothetical protein | |||
| 280 | M | M.SspPIBORF23080P (100% identity) | M.Sen318ORFHP | |
| 285 | yfaB | |||
| 430 | TnpA IS26 (1) | |||
| 435 | R | Ubap201ORF4P (100% identity) | CCWGG | Sen318ORFGP |
| 440 | M | M.Ubap201ORF4P (100% identity) | CCWGG | M.Sen318ORFGP |
| 445 | insertion element protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11195 | sialic acid transporter | |||
| 11200 | M | M.SenZ223ORF2150P (100% identity) | CAGAG | M.Sen318II |
| ??? | R | type III restriction enzyme, res subunit family | CAGAG | Sen318IIP |
| 11215 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8685 | type I restriction enzyme EcoKI subunit R | |||
| 8690 | R | StyUK1MrrP (100% identity) | Sen318MrrP | |
| 8695 | 95 aa hypothetical protein | |||