Haemophilus parasuis ZJ0906 |
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Putative Haemophilus parasuis ZJ0906 RM systems
Ref: Li,Y. et al. unpublished
REBASE ref # 16148
Complete sequence: 2,324,740 bp
GenBank #: CP005384
REBASE acronym: Hpa906
Org_num: 10729
All begin K756_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3055 | apolipoprotein N-acyltransferase | |||
| ??? | R | HpaSH03ORF2530P (99% identity) | Hpa906ORF3080P | |
| ??? | S | S.Hpa15995ORF790P (97% identity) | S.Hpa906ORF3080P | |
| 3080 | M | M.HpaSH03ORF2530P (100% identity) | M.Hpa906ORF3080P | |
| 3085 | 48 aa hypothetical protein | |||
| 4485 | 240 aa hypothetical protein | |||
| 4490 | S | S2.HpaSH03ORF4015P (95% identity) | S1.Hpa906ORF4500P | |
| 4495 | HNH endonuclease | |||
| 4500 | M | M.HpaSHORF1954P (100% identity) | M.Hpa906ORF4500P | |
| 4505 | metal-dependent hydrolase | |||
| ??? | R | HpaSHORF1950P (62% identity) | Hpa906ORF4500P | |
| 4530 | 123 aa hypothetical protein | |||
| 4535 | 389 aa hypothetical protein | |||
| 4540 | HsdR family type I site-specific | |||
| 4545 | 165 aa hypothetical protein | |||
| 4550 | S | S3.HpaSH03ORF4015P (100% identity) | S2.Hpa906ORF4500P | |
| 4555 | transposase | |||
| 4775 | histidinol-phosphate aminotransferase | |||
| 4780 | R | HpaST41ORF935P (99% identity) | Hpa906ORF4795P | |
| 4785 | 343 aa hypothetical protein | |||
| 4790 | S | S.Gpa1807ORF6225P (66% identity) | S.Hpa906ORF4795P | |
| 4795 | M | M.Gpa1433ORF4860P (79% identity) | M.Hpa906ORF4795P | |
| 4800 | 3-phosphoserine/phosphohydroxythreonine | |||
| 10650 | tRNA uridine 5-carboxymethylaminomethyl | |||
| 10655 | S | S.Gpa170504ORF12025P (61% identity) | S.Hpa906ORF10680P | |
| ??? | R | GpaHPS7ORF8505P (99% identity) | Hpa906ORF10680P | |
| 10670 | 392 aa hypothetical protein | |||
| 10675 | 77 aa hypothetical protein | |||
| 10680 | M | M.HpaST41ORF7145P (99% identity) | M.Hpa906ORF10680P | |
| 10685 | 16S rRNA methyltransferase GidB | |||
| 11525 | 42 aa hypothetical protein | |||
| 11530 | M | M.HpaST41ORF7300P (100% identity) | M.Hpa906ORF11530P | |
| 11545 | S | S.Gpa1808ORF10990P (66% identity) | S.Hpa906ORF11530P | |
| 11550 | prophage protein | |||
| 11555 | prophage protein | |||
| 11560 | R | Hpa1401ORF6765P (98% identity) | Hpa906ORF11530P | |
| 11565 | 101 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2145 | aspartate-semialdehyde dehydrogenase | |||
| ??? | RM | M.HpaSH03ORF1655P (80% identity) | Hpa906ORF2155P | |
| 2160 | ISRssp2, family IS1595 | |||
| 2660 | peptide chain release factor 1 | |||
| 2665 | M | M.HpaSH03ORF2165P (99% identity) | GCGC | M.Hpa906ORF2665P |
| 2670 | R | HpaNagORF782P (100% identity) | GCGC | Hpa906ORF2665P |
| 2675 | N5-glutamine S-adenosyl-L-methionine-dependent | |||
| 3850 | transcriptional regulator | |||
| 3855 | M | M.GpaXP11ORF2525P (100% identity) | M.Hpa906ORF3855P | |
| 3860 | 140 aa hypothetical protein | |||
| 4115 | 42 aa hypothetical protein | |||
| 4120 | M | M.Gpa412ORF8675P (100% identity) | M.Hpa906ORF4120P | |
| 4125 | 426 aa hypothetical protein | |||
| 5255 | 199 aa hypothetical protein | |||
| 5260 | M | M.HpaNagORF227P (100% identity) | CCGG | M.Hpa906ORF5260P |
| 5265 | condesin subunit E | |||
| 7265 | 3-dehydroquinate synthase | |||
| 7270 | M | M.HpaSHDamP (100% identity) | GATC | M.Hpa906ORF7270P |
| 7285 | adenylate kinase | |||
| 8090 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate | |||
| 8095 | M | M.HpaST41ORF8905P (100% identity) | CGCG | M.Hpa906ORF8095P |
| 8100 | R | HpaST41ORF8905P (100% identity) | CGCG | Hpa906ORF8095P |
| 8105 | D-lactate dehydrogenase | |||
| 8985 | 134 aa hypothetical protein | |||
| 8990 | RM | M1.Hpa318ORF5510P (100% identity) | Hpa906ORF8990P | |
| 8995 | 505 aa hypothetical protein | |||
| 8990 | type III restriction system methylase | |||
| 8995 | RM | M2.HpaSH03ORF7930P (100% identity) | Hpa906ORF8995P | |
| 9000 | restriction enzyme | |||
| 8995 | 505 aa hypothetical protein | |||
| 9000 | RM | HpaSH03ORF7930P (100% identity) | Hpa906ORF9000P | |
| 9005 | plasmid stability-like protein/nucleic | |||
| 9155 | 124 aa hypothetical protein | |||
| 9170 | M | M.HpaNagORF1948P (100% identity) | M.Hpa906ORF9170P | |
| 9175 | enoyl-CoA hydratase/carnithine racemase-like | |||
| 9530 | enoyl-CoA hydratase/carnithine racemase-like | |||
| 9535 | M | M.GpaXP11ORF6140P (94% identity) | BA | M.Hpa906ORF9535P |
| 9540 | 86 aa hypothetical protein | |||
| 10030 | 197 aa hypothetical protein | |||
| ??? | R | HpaSHORF1983P (99% identity) | AAGCTT | Hpa906ORF10045P |
| 10045 | M | M.HpaSH03ORF8550P (100% identity) | AAGCTT | M.Hpa906ORF10045P |
| 10050 | valyl-tRNA ligase | |||
| 11760 | ATPase | |||
| 11765 | RM | Hpa15995ORF225P (99% identity) | Hpa906ORF11765P | |
| ??? | S | S.HpaSH03ORF10290P (99% identity) | S.Hpa906ORF11765P | |
| 11790 | glutamate-1-semialdehyde aminotransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20 | ketol-acid reductoisomerase | |||
| ??? | M | M.GpaHPS12ORF815P (95% identity) | M.Hpa906ORF25P | |
| 45 | R | HpaST41ORF5850P (99% identity) | Hpa906ORF25P | |
| 50 | filamentation induced by cAMP protein fic | |||