Pseudomonas veronii 1YdBTEX2 |
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Putative Pseudomonas veronii 1YdBTEX2 RM systems
Ref: de Lima-Morales,D. et al. Genome Announc 1 (3), E00258-13 (2013)
REBASE ref # 16004
| Sequence length: | GenBank #: | |
| Chromosome: | 6,680,036 bp | AOUH00000000 (NZ_AOUH00000000) |
| chromosome PVE_r1: | 6,791,257 bp | LT599583 |
| chromosome PVE_r2: | 844,748 bp | LT599584 |
| plasmid PVE_plasmid: | 373,858 bp | LT599585 |
REBASE acronym: PveTEX2
Org_num: 10700
All begin PVE_P, PVE_R1G, PVE_R2G
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| ??? | R | PveT1ORF24660P (100% identity) | CGTACG | PveTEX2ORFEP |
| ??? | M | M.PspLH1G9ORFAP (99% identity) | CGTACG | M.PveTEX2ORFEP |
| ??? | RM | PspR84I (54% identity) | PveTEX2ORFAP | |
| ??? | 399 aa hypothetical protein Rmet_0004 | |||
| ??? | Type II restriction enzyme, methylase subunit | |||
| ??? | R | PspTKPORF28105P (94% identity) | PveTEX2ORFBP | |
| ??? | V | V.Pspb193ORF23990P (98% identity) | V.PveTEX2ORFCP | |
| ??? | M | M.Pspb193ORF23990P (100% identity) | GTCGAC | M.PveTEX2ORFCP |
| ??? | M | M.PspS35ORF19450P (98% identity) | M.PveTEX2ORFDP | |
| chromosome PVE_r1 | ||||
| 1980 | 265 aa hypothetical protein | |||
| 1981 | M | M.PspS35ORF19450P (98% identity) | M.PveTEX2ORFDP | |
| 1982 | reverse transcriptase | |||
| 4607 | porin | |||
| 4608 | R | PveT1ORF24660P (100% identity) | CGTACG | PveTEX2ORFEP |
| 4609 | M | M.PspLH1G9ORFAP (99% identity) | CGTACG | M.PveTEX2ORFEP |
| 4610 | ArsR family transcriptional regulator | |||
| 5148 | DNA repair protein RadC | |||
| 5149 | M | M.Pspb193ORF23990P (100% identity) | GTCGAC | M.PveTEX2ORFCP |
| ??? | V | V.Pspb193ORF23990P (98% identity) | V.PveTEX2ORFCP | |
| 5150 | 254 aa hypothetical protein | |||
| 5152 | 1330 aa hypothetical protein | |||
| ??? | R | PspTKPORF28105P (94% identity) | PveTEX2ORFBP | |
| 5154 | 71 aa hypothetical protein | |||
| 5154 | 71 aa hypothetical protein | |||
| 5155 | RM | PspR84I (54% identity) | PveTEX2ORFAP | |
| 5156 | 1041 aa hypothetical protein | |||
| chromosome PVE_r2 | ||||
| 12 | 114 aa Conserved hypothetical secreted protein | |||
| 13 | M | M.Pfl20219ORFEP (93% identity) | M.PveTEX2ORF13P | |
| 14 | 91 aa hypothetical protein | |||
| 147 | 231 aa hypothetical protein | |||
| 148 | M | M.PflSBWORF76P (91% identity) | M.PveTEX2ORF148P | |
| 149 | 120 aa hypothetical protein | |||
| 904 | Copper resistance protein D | |||
| 905 | M | M.PveTEX2ORF13P (46% identity) | M.PveTEX2ORF905P | |
| 906 | 91 aa hypothetical protein | |||
| plasmid PVE_plasmid | ||||
| 103 | 1154 aa hypothetical protein | |||
| 104 | RM | Mge961ORF2405P (74% identity) | PveTEX2ORF104P | |
| 105 | 325 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome PVE_r2 | ||||
| 920 | Mrr restriction system protein | |||
| 921 | R | Pch9446bORF5667P (93% identity) | PveTEX2ORF922P | |
| 922 | M | M.PveG2ORF25985P (94% identity) | M.PveTEX2ORF922P | |
| 923 | RNA polymerase sigma factor RpoS | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome PVE_r2 | ||||
| 919 | 244 aa hypothetical protein | |||
| 920 | R | PaePALA55MrrP (70% identity) | PveTEX2MrrP | |
| 921 | type III restriction enzyme, res | |||