Desulfotignum phosphitoxidans DSM 13687 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Desulfotignum phosphitoxidans DSM 13687 RM systems
Ref: Poehlein,A. et al. Genome Announc 1 (3), E00227-13 (2013)
REBASE ref # 15999
Contig set: 4,998,761 bp
GenBank #: APJX00000000 (NZ_APJX00000000)
REBASE acronym: Dph13687
Org_num: 10660
All begin Dpo_10c, Dpo_14c, Dpo_18c, Dpo_1c, Dpo_2c, Dpo_6c, Dpo_7c, Dpo_8c, Dpo_9c
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 590 | 74 aa hypothetical protein | |||
| 600 | R | GurSL11ORF4530P (96% identity) | Dph13687ORF600P | |
| 610 | DEAD/DEAH box helicase domain-containing | |||
| 620 | 47 aa hypothetical protein | |||
| 630 | S | S.DafPCSORF211P (38% identity) | S.Dph13687ORF600P | |
| 640 | 273 aa hypothetical protein | |||
| 650 | 344 aa hypothetical protein DUF1016 | |||
| 660 | M | M2.PcaI (88% identity) | M2.Dph13687ORF600P | |
| 670 | M | M1.GbaNRL1ORF6110P (94% identity) | M1.Dph13687ORF600P | |
| 680 | excisionase family protein | |||
| 860 | Sel1 repeat-containing protein | |||
| 870 | M | M.FspYFMORF41010P (73% identity) | M.Dph13687ORF870P | |
| 880 | S | S.VspSS3ORF1735P (68% identity) | S.Dph13687ORF870P | |
| 890 | R | Pfo12285IP (79% identity) | Dph13687ORF870P | |
| 900 | pathogenesis-like protein | |||
| 1270 | ubiquinone/menaquinone biosynthesis | |||
| 1280 | S | S.Dba7044IV (21% identity) | S.Dph13687ORF1290P | |
| 1290 | M | M.Dba7044IV (97% identity) | M.Dph13687ORF1290P | |
| 1300 | ATP-dependent DNA helicase RecG | |||
| 1310 | R | Dba7044IVP (99% identity) | Dph13687ORF1290P | |
| 1320 | nadE NH(3)-dependent NAD(+) ligase NadE | |||
| 2100 | ATPase | |||
| 2110 | M | M.TorNK122ORF20535P (75% identity) | M.Dph13687ORF2110P | |
| 2120 | ATP-dependent DNA helicase RecG | |||
| 2130 | S | S.MhoHB1ORF3702P (31% identity) | S.Dph13687ORF2110P | |
| 2140 | 23S rRNA-associated protein | |||
| 2150 | R | DvuVORF857P (62% identity) | Dph13687ORF2110P | |
| 2160 | NorA-like quinolone resistance protein | |||
| 2510 | sigma54 specific transcriptional | |||
| 2520 | R | DbaSRB2ORF1707P (77% identity) | Dph13687ORF2540P | |
| 2530 | DNA-damage-inducible protein D | |||
| 2540 | M | M.DbaSRB2ORF1707P (83% identity) | M.Dph13687ORF2540P | |
| 2550 | S | S.PspDV1ORF870P (35% identity) | S.Dph13687ORF2540P | |
| 2560 | 555 aa hypothetical protein | |||
| 4190 | 159 aa hypothetical protein | |||
| ??? | R | type I restriction-modification system restriction subunit | Dph13687ORF4200P | |
| 4220 | fumarate reductase flavoprotein subunit FrdA | |||
| 8750 | 264 aa hypothetical protein DUF2893 | |||
| 8760 | R | Dba7044IIIP (96% identity) | Dph13687ORF8780P | |
| 8770 | S | S.FspYFMORF41010P (56% identity) | S.Dph13687ORF8780P | |
| 8780 | M | M.Dba7044III (97% identity) | M.Dph13687ORF8780P | |
| 8790 | 392 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 210 | transcriptional regulator, TraR/DksA family | |||
| 220 | M | M.Dba7044ORFRP (99% identity) | CTAG | M.Dph13687ORF220P |
| 230 | PAS domain-containing S-box protein | |||
| 460 | 54 aa hypothetical protein | |||
| 470 | M | M.Dba7044I (97% identity) | CTGCAG | M.Dph13687ORF470P |
| ??? | R | DolHORF3090P (77% identity) | CTGCAG | Dph13687ORF470P |
| 500 | PAS/PAC sensor protein | |||
| 1840 | virulence protein | |||
| 1850 | RM | DspN47ORF23450P (56% identity) | Dph13687ORF1850P | |
| 1860 | ribosome biogenesis GTPase RsgA 2 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4150 | AAA-4 family protein | |||
| 4160 | R | KprFT102ORF7945P (74% identity) | Dph13687ORF4180P | |
| 4170 | 413 aa hypothetical protein DUF1016 | |||
| 4180 | M | M.TspR3ORF2045P (36% identity) | M.Dph13687ORF4180P | |
| 4190 | 66 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3720 | 4Fe-4S ferredoxin iron-sulfur binding | |||
| 3730 | R | CspESFC1MrrP (52% identity) | Dph13687Mrr2P | |
| 3740 | 62 aa hypothetical protein | |||
| 5920 | RNA-directed DNA polymerase | |||
| 5930 | R | SspSGTMMrrP (65% identity) | Dph13687MrrP | |
| 5940 | Fic family protein | |||