Helicobacter pylori UM299 |
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Putative Helicobacter pylori UM299 RM systems
Ref: Khosravi,Y. et al. unpublished
REBASE ref # 16472
Complete sequence: 1,594,569 bp
GenBank #: CP005491
REBASE acronym: Hpy299
Org_num: 10626
All begin K749_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3100 | hydroxyethylthiazole kinase | |||
| 9010 | R | HpyUM032ORF11175P (100% identity) | Hpy299ORF3120P | |
| 3115 | S | S.HpyUM032ORF11175P (100% identity) | S.Hpy299ORF3120P | |
| 3120 | M | M.HpyUM032ORF11175P (100% identity) | M.Hpy299ORF3120P | |
| 3125 | membrane protein | |||
| 3415 | 631 aa hypothetical protein | |||
| ??? | R | HpyUM032XVIP (100% identity) | CCANNNNNNTC | Hpy299ORF3435P |
| 3435 | M | M.HpyUM032XVI (100% identity) | CCANNNNNNTC | M.Hpy299ORF3435P |
| 3440 | S | S.HpyUM032XVI (100% identity) | CCANNNNNNTC | S.Hpy299ORF3435P |
| 3445 | polyphosphate kinase | |||
| 6260 | type I restriction enzyme R protein HsdR | |||
| 9160 | R | HpyUM032XIIP (100% identity) | CRTANNNNNNNTC | Hpy299XIIIP |
| 6270 | M | M.HpyUM032XII (100% identity) | CRTANNNNNNNTC | M.Hpy299XIII |
| 6275 | S | S.HpyUM032XII (100% identity) | CRTANNNNNNNTC | S.Hpy299XIII |
| 6290 | FAD-dependent thymidylate synthase | |||
| 2790 | 60 aa hypothetical protein | |||
| ??? | S | S.HpyUM032ORF8175P (100% identity) | S.Hpy299ORF2795P | |
| 2800 | cadmium transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8290 | 61 aa hypothetical protein | |||
| 3290 | R | HpyUM032ORF11004P (100% identity) | ACGT | Hpy299ORF3295P |
| 3295 | M | M.HpyUM032ORF11004P (100% identity) | ACGT | M.Hpy299ORF3295P |
| 3300 | restriction endonuclease | |||
| 3295 | DNA methyltransferase | |||
| 3300 | R | HpyUM032IIP (100% identity) | ACNGT | Hpy299IIP |
| 3305 | M | M.HpyUM032II (100% identity) | ACNGT | M.Hpy299II |
| 3310 | GTP-binding protein | |||
| 3315 | glycosyltransferase 9 family protein | |||
| 3320 | M | M.HpyUM032VII (100% identity) | ATTAAT | M.Hpy299VII |
| 3325 | membrane protein | |||
| 4335 | chaperone protein ClpB | |||
| 4340 | M | M.HpyUM032IX (100% identity) | CCGG | M.Hpy299IX |
| 4345 | R | HpyUM032IXP (100% identity) | CCGG | Hpy299IX |
| 4350 | 204 aa hypothetical protein | |||
| 4350 | 204 aa hypothetical protein | |||
| 4355 | M | M.Hpyfe35ORF5885P (100% identity) | TCGA | M.Hpy299XI |
| 4360 | exodeoxyribonuclease VII large subunit | |||
| 5090 | malonyl CoA-ACP transacylase | |||
| 5095 | R | HpyUM032IIIP (100% identity) | GATC | Hpy299IIIP |
| 5100 | M | M.HpyUM032III (100% identity) | GATC | M.Hpy299III |
| 8865 | alpha-1,2-fucosyltransferase | |||
| 5510 | proline:sodium symporter PutP | |||
| 5515 | M | M2.HpyUM032VIP (100% identity) | CCTC | M2.Hpy299VIP |
| 5520 | M | M1.HpyUM032VI (100% identity) | CCTC | M1.Hpy299VI |
| 5525 | non-functional type II restriction endonuclease | |||
| 5570 | DNA methyltransferase | |||
| 5575 | RM | HpyUM032IVP (100% identity) | GANTC | Hpy299IVP |
| 5580 | M | M.HpyUM032IV (100% identity) | GANTC | M.Hpy299IV |
| ??? | DNA methyltransferase | |||
| 5580 | DNA methyltransferase | |||
| ??? | RM | HpyUM032ORF8785P (100% identity) | Hpy299ORF5595BP | |
| 5595 | RM | HpyUM032ORF8780P (100% identity) | Hpy299ORF5595AP | |
| 5600 | nicotinate-nucleotide pyrophosphorylase | |||
| 9140 | 107 aa hypothetical protein | |||
| 6125 | R | HpyUM032VIIIP (100% identity) | TGCA | Hpy299VIIIP |
| 6130 | M | M.HpyUM032VIII (100% identity) | TGCA | M.Hpy299VIII |
| 6135 | 67 aa hypothetical protein | |||
| 6350 | DEAD/DEAH box helicase | |||
| ??? | RM | Hpy298ORF4750P (100% identity) | Hpy299ORF6360P | |
| 6365 | transcription elongation factor NusA | |||
| 6435 | membrane protein | |||
| 9170 | R | HpyUM032XP (100% identity) | CCATC | Hpy299XP |
| ??? | M | M2.HpyUM032XP (100% identity) | CCATC | M2.Hpy299X |
| 6455 | M | M1.HpyUM032X (100% identity) | CCATC | M1.Hpy299X |
| 6460 | permease | |||
| 6585 | amidophosphoribosyltransferase | |||
| 6590 | RM | HpyUM032XIII-mut1 (100% identity) | CYANNNNNNNTRG | Hpy299XII |
| 8740 | S | S.HpyUM032XIII-mut1 (52% identity) | CYANNNNNNNTRG | S1.Hpy299XII |
| 8735 | S | S2.HpyUM032XIII (100% identity) | CYANNNNNNNTRG | S2.Hpy299XII |
| 6600 | DNA polymerase I | |||
| 7730 | serine acetyltransferase | |||
| 7735 | R | HpyUM032IP (100% identity) | CATG | Hpy299IP |
| 7740 | M | M.HpyUM032I (100% identity) | CATG | M.Hpy299I |
| 7745 | hydrolase | |||
| 7890 | purine nucleoside phosphorylase | |||
| 7895 | R | HpyUM032VP (100% identity) | TCNGA | Hpy299VP |
| 7900 | M | M.HpyUM032V (100% identity) | TCNGA | M.Hpy299V |
| 8625 | 76 aa hypothetical protein | |||
| 110 | flagellar biosynthesis anti-sigma factor FlgM | |||
| ??? | M | M.HpyJ013XI (99% identity) | GCGC | M.Hpy299ORF115P |
| 120 | 144 aa hypothetical protein | |||
| 300 | Laminin subunit alpha-2 precursor | |||
| 305 | R | HpyUM032ORF5620P (100% identity) | TCNNGA | Hpy299ORF310P |
| 9255 | M | M.HpyUM032ORF5620P (100% identity) | TCNNGA | M.Hpy299ORF310P |
| 315 | acetyl-CoA carboxylase | |||
| 5660 | adenine-specific DNA methylase | |||
| 5665 | M | adenine-specific DNA methylase | M.Hpy299ORF5665P | |
| 5670 | Type III restriction enzyme R protein | |||
| 1020 | ATP-dependent DNA helicase | |||
| 1025 | M | M.HpyUM032XI (100% identity) | GTNNAC | M.Hpy299ORF1025P |
| 1030 | R | HpyUM032XIP (100% identity) | GTNNAC | Hpy299ORF1025P |
| 1035 | flagellar hook protein FlgE | |||
| 1215 | DNA gyrase subunit B | |||
| ??? | M | M.Hpy298ORF7830P (100% identity) | GTAC | M.Hpy299ORF1220P |
| 1225 | R | HpyUM032ORF6575P (100% identity) | GTAC | Hpy299ORF1220P |
| 1230 | membrane protein | |||
| 2065 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyUM032ORF7440AP (100% identity) | Hpy299ORF2070AP | |
| 2075 | RM | HpyUM032ORF7440BP (100% identity) | Hpy299ORF2070BP | |
| 2080 | membrane protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5650 | chemotaxis protein CheY | |||
| ??? | M | M.HpyUM032ORF8715P (100% identity) | M.Hpy299ORF5660P | |
| 5670 | R | HpyUM032ORF8715P (100% identity) | Hpy299ORF5660P | |
| 5675 | rod shape-determining protein MreC | |||
| 6335 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyUM032ORF3575P (100% identity) | M.Hpy299ORF6340P | |
| 6350 | R | HpyUM032ORF3575P (100% identity) | Hpy299ORF6340P | |
| 6360 | pseudogene | |||
| 6935 | biotin synthase | |||
| ??? | R | Hpy298ORF5365P (100% identity) | Hpy299ORF6945P | |
| 6945 | M | M.HpyUM032ORF4185P (100% identity) | M.Hpy299ORF6945P | |
| 6960 | citrate synthase | |||