Salmonella enterica subsp. enterica serovar Typhimurium U288 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium U288 RM systems
Ref: Hooton,S.P.T. et al. unpublished
REBASE ref # 16234
| Sequence length: | GenBank #: | |
| Chromosome: | 4,852,606 bp | CP003836 |
| plasmid pSTU288-1: | 148,711 bp | CP004058 |
REBASE acronym: SenU288
Org_num: 10515
All begin STU288_, STU288_1p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22685 | endoribonuclease SymE | |||
| 22690 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenU288ORF22695P |
| 22695 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenU288ORF22695P |
| 22700 | R | StyLT2IIP (100% identity) | GAGNNNNNNRTAYG | SenU288ORF22695P |
| 22705 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6335 | DMT superfamily transporter inner membrane | |||
| 6340 | V | V.StyUK1DcmP (100% identity) | V.SenU288DcmP | |
| 6345 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenU288DcmP |
| 6350 | hydrolase | |||
| 17150 | Factor for inversion stimulation Fis, | |||
| 17155 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenU288ORF17155P |
| 17160 | 54 aa hypothetical protein | |||
| 17615 | ribulose-phosphate 3-epimerase | |||
| 17620 | M | M.StyTDamP (100% identity) | GATC | M.SenU288DamP |
| 17625 | cell division protein DamX | |||
| 22535 | sugar/spermidine/putrescine ABC transporter | |||
| 22540 | RM | StyUK1IV (100% identity) | GATCAG | SenU288ORF22540P |
| 22545 | DNA repair ATPase | |||
| plasmid pSTU288-1 | ||||
| 105 | 73 aa hypothetical protein | |||
| 110 | M | M.SflFF87ORF23240P (100% identity) | M.SenU288ORF110P | |
| 115 | 83 aa hypothetical protein | |||
| 615 | cytoplasmic protein | |||
| 620 | M | M.StyUK1ORFAP (100% identity) | M.SenU288ORF620P | |
| 625 | cytoplasmic protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12595 | 33 aa hypothetical protein | |||
| 12600 | R | StyUK1IP (99% identity) | CAGAG | SenU288ORF12605P |
| 12605 | M | M.StyUK1I (100% identity) | CAGAG | M.SenU288ORF12605P |
| 12610 | inner membrane protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22700 | type I restriction enzyme EcoKI subunit R | |||
| 22705 | R | StyUK1MrrP (100% identity) | SenU288MrrP | |
| 22710 | 95 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13805 | 809 aa hypothetical protein | |||
| 13810 | M | M.StyLTORF13745P (100% identity) | GATC | M.SenU288ORF13810P |
| 13815 | C4-type zinc finger protein, DksA/TraR family | |||